Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KFV35_RS01340 Genome accession   NZ_CP073865
Coordinates   290845..291354 (+) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain B1276912     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 289332..314017 290845..291354 within 0


Gene organization within MGE regions


Location: 289332..314017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV35_RS01330 (KFV35_01370) - 289332..290141 (-) 810 WP_001831342.1 GH25 family lysozyme -
  KFV35_RS01335 (KFV35_01375) rpsF 290526..290822 (+) 297 WP_001831345.1 30S ribosomal protein S6 -
  KFV35_RS01340 (KFV35_01380) ssbA 290845..291354 (+) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  KFV35_RS01345 (KFV35_01385) rpsR 291399..291641 (+) 243 WP_001831354.1 30S ribosomal protein S18 -
  KFV35_RS13730 - 291834..291997 (-) 164 Protein_272 XRE family transcriptional regulator -
  KFV35_RS01350 (KFV35_01390) - 292111..292371 (-) 261 WP_001830921.1 hypothetical protein -
  KFV35_RS01355 (KFV35_01395) - 292593..292847 (+) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  KFV35_RS01360 (KFV35_01400) - 293319..293951 (+) 633 WP_001830914.1 LysE family translocator -
  KFV35_RS01365 (KFV35_01405) - 293972..294562 (+) 591 WP_002456826.1 histidine phosphatase family protein -
  KFV35_RS01370 (KFV35_01410) - 294921..295298 (-) 378 WP_002437185.1 hypothetical protein -
  KFV35_RS01375 (KFV35_01415) - 295518..296141 (-) 624 WP_002456828.1 NDxxF motif lipoprotein -
  KFV35_RS01380 (KFV35_01420) ahpF 296402..297925 (-) 1524 WP_002437172.1 alkyl hydroperoxide reductase subunit F -
  KFV35_RS01385 (KFV35_01425) ahpC 297940..298509 (-) 570 WP_002437170.1 alkyl hydroperoxide reductase subunit C -
  KFV35_RS01390 (KFV35_01430) - 298954..299733 (-) 780 WP_002437166.1 hypothetical protein -
  KFV35_RS01395 (KFV35_01435) - 299874..300629 (+) 756 WP_002455899.1 NADPH-dependent oxidoreductase -
  KFV35_RS01400 (KFV35_01440) - 300751..302139 (-) 1389 WP_001829358.1 L-cystine transporter -
  KFV35_RS01405 (KFV35_01445) - 302448..303350 (-) 903 WP_001829387.1 hypothetical protein -
  KFV35_RS01410 (KFV35_01450) - 303476..304141 (-) 666 WP_002455897.1 hypothetical protein -
  KFV35_RS01415 (KFV35_01455) - 304269..304676 (-) 408 WP_001829411.1 general stress protein -
  KFV35_RS01420 (KFV35_01460) xpt 305273..305851 (+) 579 WP_001829410.1 xanthine phosphoribosyltransferase -
  KFV35_RS01425 (KFV35_01465) pbuX 305851..307119 (+) 1269 WP_002455896.1 xanthine permease PbuX -
  KFV35_RS01430 (KFV35_01470) guaB 307157..308623 (+) 1467 WP_001829407.1 IMP dehydrogenase -
  KFV35_RS01435 (KFV35_01475) guaA 308790..310331 (+) 1542 WP_002468031.1 glutamine-hydrolyzing GMP synthase -
  KFV35_RS01440 (KFV35_01480) - 310572..311477 (-) 906 WP_002437151.1 Abi family protein -
  KFV35_RS13885 - 311480..312064 (-) 585 WP_001829376.1 site-specific integrase -
  KFV35_RS13890 - 312027..312275 (-) 249 WP_001829342.1 hypothetical protein -
  KFV35_RS13895 - 312431..312658 (-) 228 WP_002437147.1 hypothetical protein -
  KFV35_RS01450 (KFV35_01490) - 312736..313290 (-) 555 WP_001829365.1 hypothetical protein -
  KFV35_RS01455 (KFV35_01495) - 313400..314017 (-) 618 WP_001829359.1 DUF4352 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=561648 KFV35_RS01340 WP_001831333.1 290845..291354(+) (ssbA) [Staphylococcus epidermidis strain B1276912]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=561648 KFV35_RS01340 WP_001831333.1 290845..291354(+) (ssbA) [Staphylococcus epidermidis strain B1276912]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379