Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   L3474_RS00935 Genome accession   NZ_CP091450
Coordinates   171297..171890 (+) Length   197 a.a.
NCBI ID   WP_000271492.1    Uniprot ID   C1CP48
Organism   Streptococcus pneumoniae strain 3641/15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 166297..176890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3474_RS00915 (L3474_00885) ribE 167479..167946 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  L3474_RS00920 (L3474_00890) - 167947..169152 (-) 1206 WP_001814751.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  L3474_RS00925 (L3474_00895) ribE 169172..169807 (-) 636 WP_000493846.1 riboflavin synthase -
  L3474_RS00930 (L3474_00900) ribD 169792..170892 (-) 1101 WP_001284108.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  L3474_RS00935 (L3474_00905) ruvA 171297..171890 (+) 594 WP_000271492.1 Holliday junction branch migration protein RuvA Machinery gene
  L3474_RS00940 (L3474_00910) - 171900..172463 (+) 564 WP_000166585.1 DNA-3-methyladenine glycosylase I -
  L3474_RS00945 (L3474_00915) - 172460..173137 (+) 678 WP_000987422.1 CPBP family intramembrane glutamic endopeptidase -
  L3474_RS00950 (L3474_00920) - 173274..174305 (-) 1032 WP_000255096.1 S66 peptidase family protein -
  L3474_RS00955 (L3474_00925) - 174560..175243 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  L3474_RS00960 (L3474_00930) - 175255..176199 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21664.13 Da        Isoelectric Point: 6.2561

>NTDB_id=561372 L3474_RS00935 WP_000271492.1 171297..171890(+) (ruvA) [Streptococcus pneumoniae strain 3641/15]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEDQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKIAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=561372 L3474_RS00935 WP_000271492.1 171297..171890(+) (ruvA) [Streptococcus pneumoniae strain 3641/15]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGATCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGATCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CP48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

98.985

100

0.99
  ruvA Streptococcus pneumoniae R6

98.477

100

0.985
  ruvA Streptococcus pneumoniae D39

98.477

100

0.985
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.32

100

0.411