Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KSO_RS02655 Genome accession   NC_020272
Coordinates   522898..523587 (+) Length   229 a.a.
NCBI ID   WP_196758106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517898..528587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS02630 (KSO_002745) degS 518182..519345 (+) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  KSO_RS02635 (KSO_002750) degU 519422..520111 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KSO_RS02640 (KSO_002755) - 520209..521057 (+) 849 WP_003151387.1 DegV family protein -
  KSO_RS02645 (KSO_002760) comFA 521165..522550 (+) 1386 WP_015387627.1 DEAD/DEAH box helicase Machinery gene
  KSO_RS02650 (KSO_002765) - 522608..522892 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  KSO_RS02655 (KSO_002770) comFC 522898..523587 (+) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  KSO_RS02660 (KSO_002775) - 523661..524080 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  KSO_RS02665 (KSO_002780) flgM 524150..524416 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KSO_RS02670 (KSO_002785) - 524431..524913 (+) 483 WP_003151394.1 flagellar protein FlgN -
  KSO_RS02675 (KSO_002790) flgK 524929..526446 (+) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  KSO_RS02680 (KSO_002795) flgL 526458..527375 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  KSO_RS02685 (KSO_002800) - 527466..528035 (+) 570 WP_015387630.1 DUF6470 family protein -
  KSO_RS02690 (KSO_002805) fliW 528065..528496 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25199.91 Da        Isoelectric Point: 8.4060

>NTDB_id=56079 KSO_RS02655 WP_196758106.1 522898..523587(+) (comFC) [Bacillus amyloliquefaciens IT-45]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LCNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=56079 KSO_RS02655 WP_196758106.1 522898..523587(+) (comFC) [Bacillus amyloliquefaciens IT-45]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTGTAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment