Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KSO_RS02645 Genome accession   NC_020272
Coordinates   521165..522550 (+) Length   461 a.a.
NCBI ID   WP_015387627.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516165..527550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS02625 (KSO_002740) - 517312..517959 (-) 648 WP_003151384.1 YigZ family protein -
  KSO_RS02630 (KSO_002745) degS 518182..519345 (+) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  KSO_RS02635 (KSO_002750) degU 519422..520111 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KSO_RS02640 (KSO_002755) - 520209..521057 (+) 849 WP_003151387.1 DegV family protein -
  KSO_RS02645 (KSO_002760) comFA 521165..522550 (+) 1386 WP_015387627.1 DEAD/DEAH box helicase Machinery gene
  KSO_RS02650 (KSO_002765) - 522608..522892 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  KSO_RS02655 (KSO_002770) comFC 522898..523587 (+) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  KSO_RS02660 (KSO_002775) - 523661..524080 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  KSO_RS02665 (KSO_002780) flgM 524150..524416 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KSO_RS02670 (KSO_002785) - 524431..524913 (+) 483 WP_003151394.1 flagellar protein FlgN -
  KSO_RS02675 (KSO_002790) flgK 524929..526446 (+) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  KSO_RS02680 (KSO_002795) flgL 526458..527375 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52443.84 Da        Isoelectric Point: 10.1546

>NTDB_id=56078 KSO_RS02645 WP_015387627.1 521165..522550(+) (comFA) [Bacillus amyloliquefaciens IT-45]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSATRQIT
YCRACVMMGRADELTSLYSWNQAPENSWGPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQICVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=56078 KSO_RS02645 WP_015387627.1 521165..522550(+) (comFA) [Bacillus amyloliquefaciens IT-45]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCACGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGATATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625

Multiple sequence alignment