Detailed information NTG0560539

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KFB96_RS12705
• Genome accession: NZ_CP073760
• Coordinates: 2814231..2815583 (+)
• Length: 450 a.a.
• NCBI ID: WP_213458083.1
• Uniprot ID: -
• Organism: MAG: Thiocapsa sp. isolate M50B4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2809231..2820583

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFB96_RS12690 (KFB96_12690)	sucD	2810180..2811052 (-)	873	WP_213458085.1	succinate--CoA ligase subunit alpha	-
KFB96_RS12695 (KFB96_12695)	sucC	2811054..2812241 (-)	1188	WP_213458084.1	ADP-forming succinate--CoA ligase subunit beta	-
KFB96_RS12700 (KFB96_12700)	-	2812400..2814046 (+)	1647	WP_300971703.1	ATP-binding protein	-
KFB96_RS12705 (KFB96_12705)	pilR	2814231..2815583 (+)	1353	WP_213458083.1	sigma-54 dependent transcriptional regulator	Regulator
KFB96_RS12710 (KFB96_12710)	argA	2815612..2817000 (+)	1389	WP_213458082.1	amino-acid N-acetyltransferase	-

Sequence

Protein

• Length: 450 a.a.
• Molecular weight: 49052.42 Da
• Isoelectric Point: 5.8545

>NTDB_id=560539 KFB96_RS12705 WP_213458083.1 2814231..2815583(+) (pilR) [MAG: Thiocapsa sp. isolate M50B4]
MTKAQALVVDDESDILDLLKITLGRMDIRALTAMTVIDAKHQLERNRFDLCLTDMSLPDGNGIDLIRHIAEHYPDLPVAM
ITAHGNMESAVAAMKAGAFDFVPKPVDLQLLRQLVSSALRLRETAATGEDSRSAGGVSLIGDSRAMDQIRQMIAKLARNQ
APVFITGESGTGKELAARLIHGQGPRGTGPFVAVNCGAIPQDLVESELFGHKKGSFTGAVSDKEGLFQAASGGTLFLDEV
ADLPLPAQVKLLRAVQEKSVRPVGAQQEVAVDARIISASHRDLNLEVDKGHFRQDLFYRINVIELRMPALRERPRDIPAL
AERMLLRIARHHKGQPAMTLSADALDALMDYGFPGNVRELENILERATALCEGSLIEIGDLYLPQADSPALAARGPIDDS
VPLEDYLGEIEKKAILDALDETRWNRTAAAKKLGMTLRSLRYRLAKLGIE

Nucleotide

• Length: 1353 bp

>NTDB_id=560539 KFB96_RS12705 WP_213458083.1 2814231..2815583(+) (pilR) [MAG: Thiocapsa sp. isolate M50B4]
ATGACGAAGGCTCAAGCACTGGTCGTCGACGACGAGTCCGATATCCTCGACCTCTTGAAGATCACCCTCGGCCGTATGGA
CATTCGGGCACTGACCGCCATGACGGTCATCGATGCCAAGCACCAGCTCGAACGCAACCGCTTCGACCTCTGCCTGACCG
ACATGAGCCTCCCGGACGGCAACGGCATCGACCTGATCCGACACATCGCCGAGCACTATCCCGATCTGCCGGTCGCCATG
ATCACCGCCCACGGCAACATGGAATCGGCAGTCGCCGCCATGAAGGCCGGGGCCTTCGACTTTGTCCCCAAACCGGTGGA
TCTTCAGCTCCTGCGCCAGCTCGTCAGCTCGGCGCTGCGGCTGCGCGAGACCGCAGCCACCGGGGAGGACAGCCGTAGCG
CCGGCGGGGTAAGCCTGATCGGGGACTCGCGCGCGATGGATCAAATCCGGCAGATGATCGCCAAGCTTGCGCGCAACCAG
GCGCCGGTCTTCATTACCGGCGAGAGCGGAACAGGCAAGGAGCTGGCCGCCCGACTCATCCACGGCCAAGGCCCGCGTGG
CACGGGACCCTTCGTCGCCGTCAACTGCGGGGCCATTCCGCAGGACTTGGTCGAAAGCGAGCTGTTCGGTCACAAGAAGG
GCAGCTTCACCGGCGCCGTGAGCGACAAGGAAGGGCTTTTCCAAGCCGCCTCGGGCGGCACCCTGTTTCTCGACGAAGTC
GCCGATCTGCCGCTGCCGGCGCAGGTGAAGCTCTTGCGGGCCGTCCAGGAGAAGAGCGTGCGTCCGGTCGGTGCCCAACA
AGAGGTCGCCGTGGATGCGCGGATCATCAGCGCCAGTCATCGCGATCTCAACCTGGAGGTCGACAAGGGCCACTTCAGGC
AAGATCTCTTTTATCGCATCAACGTCATCGAGCTGCGCATGCCCGCGCTGCGCGAGCGCCCCCGCGACATCCCCGCCCTG
GCGGAACGGATGCTGCTGCGGATCGCCCGGCATCATAAGGGCCAGCCCGCCATGACCCTCTCGGCGGACGCCCTCGATGC
CTTGATGGACTACGGCTTTCCGGGCAACGTGCGCGAGCTCGAAAACATCCTCGAGCGTGCGACCGCCCTCTGCGAGGGAT
CGCTCATCGAGATCGGGGATCTCTATCTTCCGCAGGCCGACAGTCCGGCGCTCGCCGCCAGGGGACCGATCGACGACAGT
GTTCCGCTGGAGGACTATCTCGGCGAGATCGAGAAGAAGGCGATCCTCGATGCGCTCGACGAGACGCGTTGGAACCGCAC
CGCCGCGGCCAAGAAGCTGGGGATGACCCTCAGATCGTTGCGTTATCGTCTCGCCAAGCTCGGCATCGAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (407-447)

• Sigma-54 interaction domain (Sigma54_activat) (139-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.013	100	0.616
pilR	Acinetobacter baumannii strain A118	50.87	100	0.52
luxO	Vibrio cholerae strain A1552	37.808	99.333	0.376