Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KD909_RS14865 Genome accession   NZ_CP073755
Coordinates   2866957..2867466 (-) Length   169 a.a.
NCBI ID   WP_015880231.1    Uniprot ID   -
Organism   Exiguobacterium sp. PFWT01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2861957..2872466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD909_RS14845 (KD909_14845) dnaB 2862729..2864081 (-) 1353 WP_015880235.1 replicative DNA helicase -
  KD909_RS14850 (KD909_14850) rplI 2864099..2864542 (-) 444 WP_159563195.1 50S ribosomal protein L9 -
  KD909_RS14855 (KD909_14855) - 2864539..2866530 (-) 1992 WP_211782027.1 DHH family phosphoesterase -
  KD909_RS14860 (KD909_14860) rpsR 2866683..2866913 (-) 231 WP_015880232.1 30S ribosomal protein S18 -
  KD909_RS14865 (KD909_14865) ssbA 2866957..2867466 (-) 510 WP_015880231.1 single-stranded DNA-binding protein Machinery gene
  KD909_RS14870 (KD909_14870) rpsF 2867504..2867791 (-) 288 WP_015880230.1 30S ribosomal protein S6 -
  KD909_RS14875 (KD909_14875) ychF 2867922..2869022 (-) 1101 WP_031424089.1 redox-regulated ATPase YchF -
  KD909_RS14880 (KD909_14880) - 2869176..2869379 (-) 204 WP_047795718.1 DUF951 domain-containing protein -
  KD909_RS14885 (KD909_14885) - 2869369..2870310 (-) 942 WP_074035244.1 mechanosensitive ion channel family protein -
  KD909_RS14890 (KD909_14890) yyaC 2870480..2871106 (+) 627 WP_015880226.1 spore protease YyaC -
  KD909_RS14895 (KD909_14895) - 2871079..2871861 (-) 783 WP_211782028.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18119.93 Da        Isoelectric Point: 5.0077

>NTDB_id=560528 KD909_RS14865 WP_015880231.1 2866957..2867466(-) (ssbA) [Exiguobacterium sp. PFWT01]
MINRVVLVGRLTRDPEMRYTQSGIAVTRLTLACDRPFAGQDGKRETDFIDCVVWRKQAENVAQYLKKGSMAGVDGRLQIS
SYEGQDGQRRYRAEVVADSVRFLEPRGASGQREQAPSGDVFGGGESSGSGWGAGAASTSSQSSNSNKGFDADPFSGGGKI
DLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=560528 KD909_RS14865 WP_015880231.1 2866957..2867466(-) (ssbA) [Exiguobacterium sp. PFWT01]
ATGATTAACCGAGTTGTGTTAGTTGGTCGATTGACTCGCGATCCCGAAATGCGTTATACGCAGAGCGGAATCGCCGTAAC
ACGCCTTACTCTCGCTTGCGATCGTCCATTCGCTGGACAAGATGGGAAGCGCGAGACGGACTTTATTGATTGTGTCGTTT
GGCGCAAACAAGCAGAGAACGTAGCACAATACTTGAAAAAGGGCAGCATGGCCGGCGTTGACGGTCGCCTTCAAATCAGT
AGTTACGAAGGACAAGATGGCCAACGTCGTTACCGGGCAGAAGTAGTCGCCGACAGCGTACGCTTCCTTGAACCACGCGG
AGCCTCAGGGCAACGTGAGCAAGCACCATCAGGAGATGTCTTCGGTGGTGGTGAATCAAGTGGATCAGGATGGGGCGCAG
GAGCCGCTTCGACTTCATCTCAGTCCTCGAATTCGAATAAAGGTTTTGACGCAGATCCGTTCTCGGGTGGCGGCAAAATC
GACTTGTCAGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.977

100

0.544
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.497
  ssb Glaesserella parasuis strain SC1401

32.447

100

0.361