Detailed information NTG0560387

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KFF03_RS14635
• Genome accession: NZ_CP073745
• Coordinates: 3222575..3223930 (+)
• Length: 451 a.a.
• NCBI ID: WP_255857658.1
• Uniprot ID: A0A9J7AE16
• Organism: Bacterioplanoides sp. SCSIO 12839
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3217575..3228930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KFF03_RS14615 (KFF03_14555)	-	3218063..3218947 (+)	885	WP_255857654.1	outer membrane protein assembly factor BamD	-
KFF03_RS14620 (KFF03_14560)	-	3218983..3219213 (+)	231	WP_255857655.1	DUF2798 domain-containing protein	-
KFF03_RS14625 (KFF03_14565)	-	3219288..3220922 (-)	1635	WP_255857656.1	NAD+ synthase	-
KFF03_RS14630 (KFF03_14570)	-	3221019..3222554 (+)	1536	WP_255857657.1	PAS domain-containing sensor histidine kinase	-
KFF03_RS14635 (KFF03_14575)	pilR	3222575..3223930 (+)	1356	WP_255857658.1	sigma-54 dependent transcriptional regulator	Regulator
KFF03_RS14640 (KFF03_14580)	-	3224008..3224559 (+)	552	WP_255857659.1	GspH/FimT family pseudopilin	-
KFF03_RS14645 (KFF03_14585)	-	3224662..3225192 (+)	531	WP_255857660.1	hypothetical protein	-
KFF03_RS14650 (KFF03_14590)	-	3225208..3225576 (+)	369	WP_255857661.1	hypothetical protein	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 50022.46 Da
• Isoelectric Point: 5.2360

>NTDB_id=560387 KFF03_RS14635 WP_255857658.1 3222575..3223930(+) (pilR) [Bacterioplanoides sp. SCSIO 12839]
MSQYTALIIDDEPDIRDLIALTLQRMDMNCYQAGSVSEALALLQQRPYHFCITDMKLPDGNGLEIIELCHAKYTDMPIAM
ITAFGSMDLAVNALKAGAFDLVAKPIDIVRLRELVQAALRLTKVPANIDAVPSAQGLLGSSAVMEQLKENIRKVARTQAP
VFIHGQSGTGKELVAKLIHHQSVRASQPFIAVNCGAIPKDLMESEFFGHVKGSFTGASSDKAGFFKAAQGGTLFLDEVAE
LPLDMQAKLLRVIQEKAVRAVGSEHEDPVDVRIVSASHKDLQALVDKEAFRQDLYFRLNVIQVCVPRLAERPEDIPLLTR
HFIRKYAQEWGMPEVDLSPRAADALQRYSFPGNVRELENILQRAFTMAEGELISIDDLSLSDETQAMTQSHSDDGEMTIE
TNNLEAYLENIERLAITQALEATRWNKTAAAEKLGISFRALRYRCKKLAID

Nucleotide

• Length: 1356 bp

>NTDB_id=560387 KFF03_RS14635 WP_255857658.1 3222575..3223930(+) (pilR) [Bacterioplanoides sp. SCSIO 12839]
ATGAGCCAATACACCGCCCTTATTATCGACGATGAACCCGATATCCGCGATTTAATTGCGCTGACTCTGCAACGTATGGA
CATGAATTGCTACCAGGCTGGCAGTGTCAGCGAAGCCTTAGCTCTGTTGCAACAACGGCCATACCATTTCTGCATTACCG
ACATGAAACTCCCCGATGGCAATGGGCTCGAAATCATTGAGCTGTGTCACGCAAAATACACGGATATGCCCATCGCCATG
ATTACCGCTTTTGGCAGTATGGATTTGGCAGTGAATGCCTTAAAAGCCGGGGCCTTCGACCTGGTTGCCAAGCCGATTGA
TATCGTCCGTTTAAGAGAACTGGTTCAGGCCGCGCTACGCTTGACAAAAGTGCCGGCGAACATTGATGCCGTTCCTTCTG
CACAAGGCCTGCTTGGCAGCTCAGCGGTGATGGAACAACTCAAAGAAAACATCCGTAAAGTGGCCCGCACCCAGGCTCCG
GTTTTTATCCACGGCCAATCCGGTACAGGGAAAGAACTGGTCGCCAAGTTGATTCATCATCAGAGTGTGCGTGCCAGCCA
ACCGTTTATTGCAGTTAACTGCGGCGCCATTCCCAAAGACCTGATGGAAAGTGAATTCTTTGGCCATGTGAAAGGCTCAT
TCACCGGAGCCAGCAGTGATAAAGCCGGCTTCTTTAAAGCCGCTCAGGGAGGCACTTTGTTTCTCGATGAAGTAGCCGAA
CTGCCACTGGATATGCAAGCCAAACTACTGCGCGTGATTCAGGAAAAAGCCGTGCGCGCGGTGGGCAGCGAGCACGAAGA
CCCAGTGGATGTGCGCATTGTCTCTGCCAGCCACAAAGACCTTCAGGCTCTTGTCGATAAAGAAGCGTTCCGGCAAGATC
TGTACTTCCGCTTAAACGTGATTCAGGTATGTGTACCCCGCCTGGCCGAACGGCCTGAAGATATCCCGCTGTTAACTCGT
CATTTCATACGCAAATACGCTCAGGAATGGGGCATGCCCGAAGTCGATTTATCCCCGCGCGCGGCGGATGCTTTGCAGCG
ATACAGCTTCCCGGGCAATGTCCGTGAGTTAGAAAATATCCTGCAACGCGCCTTCACCATGGCAGAGGGCGAACTGATCA
GCATTGACGACTTAAGCCTGTCTGACGAAACTCAGGCAATGACTCAATCGCACTCTGACGATGGTGAAATGACCATCGAA
ACTAACAACCTAGAAGCCTACCTGGAAAACATCGAGCGCCTGGCGATTACTCAGGCGCTGGAAGCCACGCGCTGGAATAA
AACCGCAGCCGCCGAAAAACTCGGGATTAGCTTCCGTGCATTGCGTTATCGCTGTAAGAAGCTTGCCATTGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

• Bacterial regulatory protein, Fis family (HTH_8) (408-448)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	56.416	100	0.565
pilR	Acinetobacter baumannii strain A118	47.835	100	0.49
luxO	Vibrio cholerae strain A1552	37.788	96.231	0.364