Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C663_RS17315 Genome accession   NC_020244
Coordinates   3462947..3464338 (-) Length   463 a.a.
NCBI ID   WP_015384785.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457947..3469338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS17280 (C663_3426) flgL 3458118..3459014 (-) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  C663_RS17285 (C663_3427) flgK 3459025..3460548 (-) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  C663_RS17290 (C663_3428) flgN 3460567..3461049 (-) 483 WP_014481048.1 flagellar protein FlgN -
  C663_RS17295 (C663_3429) flgM 3461065..3461331 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  C663_RS17300 (C663_3430) yvyF 3461412..3461831 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C663_RS17305 (C663_3431) comFC 3461905..3462627 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  C663_RS17310 comFB 3462591..3462887 (-) 297 WP_015483764.1 late competence protein ComFB -
  C663_RS17315 (C663_3433) comFA 3462947..3464338 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  C663_RS17320 (C663_3434) fakBA 3464444..3465289 (-) 846 WP_003227986.1 DegV family protein -
  C663_RS17325 (C663_3435) degU 3465387..3466076 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C663_RS17330 degS 3466159..3467316 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C663_RS17335 (C663_3436) yvyE 3467533..3468186 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52498.54 Da        Isoelectric Point: 9.9354

>NTDB_id=56032 C663_RS17315 WP_015384785.1 3462947..3464338(-) (comFA) [Bacillus subtilis XF-1]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLNLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=56032 C663_RS17315 WP_015384785.1 3462947..3464338(-) (comFA) [Bacillus subtilis XF-1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGGAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATT
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGTTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCAATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985

Multiple sequence alignment