Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C663_RS17325 Genome accession   NC_020244
Coordinates   3465387..3466076 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis XF-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3460387..3471076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS17290 (C663_3428) flgN 3460567..3461049 (-) 483 WP_014481048.1 flagellar protein FlgN -
  C663_RS17295 (C663_3429) flgM 3461065..3461331 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  C663_RS17300 (C663_3430) yvyF 3461412..3461831 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C663_RS17305 (C663_3431) comFC 3461905..3462627 (-) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  C663_RS17310 comFB 3462591..3462887 (-) 297 WP_015483764.1 late competence protein ComFB -
  C663_RS17315 (C663_3433) comFA 3462947..3464338 (-) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  C663_RS17320 (C663_3434) fakBA 3464444..3465289 (-) 846 WP_003227986.1 DegV family protein -
  C663_RS17325 (C663_3435) degU 3465387..3466076 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C663_RS17330 degS 3466159..3467316 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C663_RS17335 (C663_3436) yvyE 3467533..3468186 (+) 654 WP_003227979.1 YigZ family protein -
  C663_RS17340 (C663_3437) tagV 3468186..3469361 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C663_RS17345 (C663_3438) tagO 3469434..3470510 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=56033 C663_RS17325 WP_003219701.1 3465387..3466076(-) (degU) [Bacillus subtilis XF-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=56033 C663_RS17325 WP_003219701.1 3465387..3466076(-) (degU) [Bacillus subtilis XF-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment