Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   C663_RS12430 Genome accession   NC_020244
Coordinates   2492345..2492962 (-) Length   205 a.a.
NCBI ID   WP_015384132.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2487345..2497962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS12405 (C663_2437) rpsT 2487647..2487913 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  C663_RS12410 (C663_2438) holA 2487928..2488971 (-) 1044 WP_015384130.1 DNA polymerase III subunit delta -
  C663_RS21335 (C663_2439) - 2489011..2489160 (-) 150 WP_003229985.1 hypothetical protein -
  C663_RS20825 (C663_2440) yqzM 2489201..2489335 (+) 135 WP_003229983.1 YqzM family protein -
  C663_RS12420 (C663_2441) comEC 2489375..2491705 (-) 2331 WP_041517945.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C663_RS12425 (C663_2442) comEB 2491709..2492278 (-) 570 WP_003229978.1 ComE operon protein 2 -
  C663_RS12430 (C663_2443) comEA 2492345..2492962 (-) 618 WP_015384132.1 competence protein ComEA Machinery gene
  C663_RS12435 (C663_2444) comER 2493046..2493867 (+) 822 WP_004398597.1 late competence protein ComER -
  C663_RS12440 (C663_2445) yqeM 2493933..2494676 (-) 744 WP_015384134.1 class I SAM-dependent methyltransferase -
  C663_RS12445 (C663_2446) rsfS 2494673..2495029 (-) 357 WP_014480315.1 ribosome silencing factor -
  C663_RS12450 (C663_2447) yqeK 2495047..2495607 (-) 561 WP_015384135.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  C663_RS12455 (C663_2448) nadD 2495597..2496166 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  C663_RS12460 (C663_2449) yhbY 2496178..2496468 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  C663_RS12465 (C663_2450) aroE 2496462..2497304 (-) 843 WP_015384136.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21744.44 Da        Isoelectric Point: 4.7155

>NTDB_id=56016 C663_RS12430 WP_015384132.1 2492345..2492962(-) (comEA) [Bacillus subtilis XF-1]
MNWLNQHKKAIVLAASAAVFTAIMIFLATGKNKDLVKQAIPTETENTVVKQEANNDESSETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=56016 C663_RS12430 WP_015384132.1 2492345..2492962(-) (comEA) [Bacillus subtilis XF-1]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTGTTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGACCTGGTGAAGCAAGCTATACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTTTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCCTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

97.561

100

0.976
  comEA Staphylococcus aureus N315

33.784

100

0.366

Multiple sequence alignment