Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SCSC_RS08935 Genome accession   NZ_AP014647
Coordinates   1806526..1807116 (-) Length   196 a.a.
NCBI ID   WP_006269776.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801526..1812116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS08910 (SCSC_1836) - 1801624..1803633 (-) 2010 WP_006269786.1 hypothetical protein -
  SCSC_RS08915 (SCSC_1837) - 1803731..1804069 (-) 339 WP_006269785.1 hypothetical protein -
  SCSC_RS08920 (SCSC_1838) - 1804383..1805237 (+) 855 WP_006269782.1 Rgg/GadR/MutR family transcriptional regulator -
  SCSC_RS08925 (SCSC_1839) - 1805398..1805811 (+) 414 WP_006269778.1 EamA family transporter -
  SCSC_RS08930 (SCSC_1840) - 1805951..1806514 (-) 564 WP_006269774.1 DNA-3-methyladenine glycosylase I -
  SCSC_RS08935 (SCSC_1841) ruvA 1806526..1807116 (-) 591 WP_006269776.1 Holliday junction branch migration protein RuvA Machinery gene
  SCSC_RS08940 (SCSC_1842) hexB 1807502..1809448 (-) 1947 WP_006269779.1 DNA mismatch repair endonuclease MutL Machinery gene
  SCSC_RS08945 (SCSC_1843) brsR 1809695..1810135 (+) 441 WP_006269783.1 LytTR family DNA-binding domain-containing protein Regulator
  SCSC_RS08950 (SCSC_1844) - 1810132..1810590 (+) 459 WP_003071509.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21697.12 Da        Isoelectric Point: 5.8293

>NTDB_id=56013 SCSC_RS08935 WP_006269776.1 1806526..1807116(-) (ruvA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQLNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIERKNITYLTKFPKIGKKTAQQMVLDLEDKVVAAGQVAAPQTQAVTSDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=56013 SCSC_RS08935 WP_006269776.1 1806526..1807116(-) (ruvA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGTACGAATATTTCAAAGGAATTTTAAGTAAAATTACAGCCAAGTATATTGTGGTGGAAGTAGGACAAATTGGCTATAT
CCTTCATGTGGCTAACCCTTATGCCTATTCAGGTCAGCTCAATCAAGAAATTCAGGTTTTTGTTCATCAAGTGGTCAGAG
AAGATGCGCAGCTCCTCTACGGTTTTCGCACAGAAGACGAAAAACAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGCCCCGTTTCTGCTCTTGCGATAATCGCAGCTGATGATAATGCTGGATTAGTGCAAGCCATTGAGCGGAAAAACATCAC
CTATCTGACCAAGTTTCCCAAGATAGGCAAAAAGACAGCCCAGCAGATGGTGTTGGACTTGGAAGACAAGGTCGTGGCGG
CTGGGCAAGTGGCTGCGCCTCAGACCCAAGCAGTGACATCGGACAACCAAGAGTTGGAAGAAGCCATGGAAGCCATGCTG
GCTCTGGGCTACAAGGCTGCTGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACAACAGATACGGCTGAAAATTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

83.838

100

0.847
  ruvA Streptococcus pneumoniae D39

83.838

100

0.847
  ruvA Streptococcus pneumoniae TIGR4

83.838

100

0.847
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.614

100

0.418

Multiple sequence alignment