Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C663_RS12270 Genome accession   NC_020244
Coordinates   2460778..2461545 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2455778..2466545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS12250 (C663_2405) ppsR 2455952..2456764 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  C663_RS12255 (C663_2406) ccpN 2456790..2457428 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  C663_RS12260 (C663_2407) glyS 2457561..2459600 (-) 2040 WP_015384117.1 glycine--tRNA ligase subunit beta -
  C663_RS12265 (C663_2408) glyQ 2459593..2460480 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  C663_RS12270 (C663_2409) recO 2460778..2461545 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  C663_RS20820 (C663_2410) yqzL 2461582..2461725 (-) 144 WP_003230053.1 YqzL family protein -
  C663_RS12275 (C663_2411) era 2461873..2462778 (-) 906 WP_003230051.1 GTPase Era -
  C663_RS12280 (C663_2412) cdd 2462759..2463169 (-) 411 WP_003230049.1 cytidine deaminase -
  C663_RS12285 (C663_2413) unpK 2463288..2463659 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  C663_RS12290 (C663_2414) ybeY 2463640..2464113 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  C663_RS12295 (C663_2415) pgpH 2464114..2466249 (-) 2136 WP_080030679.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=56013 C663_RS12270 WP_015384118.1 2460778..2461545(-) (recO) [Bacillus subtilis XF-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=56013 C663_RS12270 WP_015384118.1 2460778..2461545(-) (recO) [Bacillus subtilis XF-1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTATTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATACTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment