Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   C9J31_RS22395 Genome accession   NZ_CP073713
Coordinates   4616980..4617693 (+) Length   237 a.a.
NCBI ID   WP_107951659.1    Uniprot ID   -
Organism   Lysinibacillus parviboronicapiens strain VT1065     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4611980..4622693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J31_RS22365 - 4612701..4613171 (-) 471 WP_107951664.1 DinB family protein -
  C9J31_RS22370 - 4613414..4613815 (-) 402 WP_107951663.1 hypothetical protein -
  C9J31_RS22375 - 4614120..4615037 (+) 918 WP_107951662.1 ABC transporter ATP-binding protein -
  C9J31_RS22380 - 4615034..4615786 (+) 753 WP_107951661.1 ABC transporter permease -
  C9J31_RS22385 - 4615799..4616530 (+) 732 WP_107951666.1 ABC transporter permease -
  C9J31_RS22390 - 4616550..4616900 (+) 351 WP_107951660.1 YxeA family protein -
  C9J31_RS22395 scnR 4616980..4617693 (+) 714 WP_107951659.1 response regulator transcription factor Regulator
  C9J31_RS22400 - 4617694..4619115 (+) 1422 WP_107951658.1 HAMP domain-containing sensor histidine kinase -
  C9J31_RS22405 - 4619892..4620659 (-) 768 WP_107951657.1 HAD-IIB family hydrolase -
  C9J31_RS22410 - 4620748..4621410 (+) 663 WP_107951656.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26684.91 Da        Isoelectric Point: 5.2067

>NTDB_id=560140 C9J31_RS22395 WP_107951659.1 4616980..4617693(+) (scnR) [Lysinibacillus parviboronicapiens strain VT1065]
MGNLKDKKILIVDDEPEISKMIEGFLRKDGFFRIYSATDCSSALSICQTDKPDIAILDVMLPDGDGFSLLSSIRQFSEMP
ILFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLTAILKRVYSSPVSEKLSVFQLGEQTINLESAVVNKNQKELPL
TAKEHAILVKLYENQGRIVTSDALCQAVWGDDSYGYENTLMVHIRRVREKIETDPSKPIYLLTVRGLGYKLLVKETR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=560140 C9J31_RS22395 WP_107951659.1 4616980..4617693(+) (scnR) [Lysinibacillus parviboronicapiens strain VT1065]
GTGGGAAATTTAAAAGACAAAAAAATATTAATTGTAGATGATGAACCGGAGATAAGCAAAATGATTGAAGGTTTTTTGAG
AAAAGATGGTTTTTTTCGTATTTATAGCGCAACTGATTGCAGCTCCGCCCTGTCAATCTGCCAAACAGATAAGCCGGATA
TAGCAATTCTTGATGTCATGTTACCTGATGGCGACGGATTTTCACTTTTGTCATCCATCAGACAATTCTCCGAAATGCCA
ATCCTTTTTCTTTCGGCACGGGGAGAGGATGAAGACCGTTTACTAGGACTAGGTCTAGGAGCAGATGATTATATTGTGAA
GCCGTTTTTACCGCGGGAACTAGTATTACGGCTTACGGCAATTCTGAAAAGAGTATACTCCTCTCCTGTTTCGGAGAAAT
TGTCTGTTTTCCAACTTGGAGAACAGACAATTAATCTAGAAAGTGCAGTCGTAAATAAGAATCAAAAGGAGCTACCATTG
ACTGCAAAGGAGCATGCTATTCTTGTGAAATTGTATGAAAATCAGGGGAGAATTGTTACAAGTGATGCCCTATGCCAGGC
AGTTTGGGGAGATGACAGCTACGGTTATGAAAATACATTGATGGTACATATCAGGAGAGTTCGTGAAAAAATTGAGACGG
ATCCTTCCAAACCAATTTATCTTCTCACTGTTAGGGGACTGGGATATAAACTGTTAGTGAAGGAGACAAGATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.082

97.468

0.498
  micA Streptococcus pneumoniae Cp1015

42.609

97.046

0.414
  vicR Streptococcus mutans UA159

41.558

97.468

0.405