NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	KB879_RS28595	Genome accession	NZ_CP073677
Coordinates	6142704..6143606 (+)	Length	300 a.a.
NCBI ID	WP_013958060.1	Uniprot ID	G0EX70
Organism	Cupriavidus sp. KK10
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6137704..6148606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KB879_RS28570 (KB879_28570)	ispB	6137850..6138779 (+)	930	WP_049800579.1	octaprenyl diphosphate synthase	-
KB879_RS28580 (KB879_28580)	-	6139097..6139378 (-)	282	WP_249221207.1	helix-turn-helix domain-containing protein	-
KB879_RS28585 (KB879_28585)	pilB	6139619..6141349 (+)	1731	WP_211980320.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KB879_RS28590 (KB879_28590)	-	6141429..6142700 (+)	1272	WP_013958059.1	type II secretion system F family protein	-
KB879_RS28595 (KB879_28595)	pilD	6142704..6143606 (+)	903	WP_013958060.1	A24 family peptidase	Machinery gene
KB879_RS28600 (KB879_28600)	coaE	6143670..6144296 (+)	627	WP_035826779.1	dephospho-CoA kinase	-
KB879_RS28605 (KB879_28605)	zapD	6144506..6145264 (+)	759	WP_035826777.1	cell division protein ZapD	-
KB879_RS28610 (KB879_28610)	-	6145282..6145470 (+)	189	WP_013958063.1	DNA gyrase inhibitor YacG	-
KB879_RS28615 (KB879_28615)	-	6145500..6147576 (-)	2077	Protein_5693	OPT family oligopeptide transporter	-
KB879_RS28620 (KB879_28620)	-	6147671..6148117 (-)	447	WP_211980321.1	NUDIX domain-containing protein	-

Sequence

Protein

Download Length: 300 a.a. Molecular weight: 32083.30 Da Isoelectric Point: 8.0346

                                >NTDB_id=559879 KB879_RS28595 WP_013958060.1 6142704..6143606(+) (pilD) [Cupriavidus sp. KK10]

MLSAWSASPYPTGGAPLVEALAALPPAFLVAAAALLGLVVGSFLNVVIHRMPRMMERDEANYIAELRGDPLPHPGRYNLM

VPRSACPHCGHAIAPWENVPVLSYLFLRGRCSACKAPISVRYPLVELACGVLSALVAWRFGPGGQALAALVLVWALLALT

MIDADTQLLPDQITLPLLWLGLLLNLGGVFVALPDAVIGAAAGYLVLWTAYWLFRLVRGKEGMGFGDFKLMAALGAWFGW

QALPALVLLSSVVGVLFGLANIVLRRQERDTPFPFGPFIALAGVVVLLFGPGVLPLFAWP

Nucleotide

Download Length: 903 bp

                                >NTDB_id=559879 KB879_RS28595 WP_013958060.1 6142704..6143606(+) (pilD) [Cupriavidus sp. KK10]

ATGTTGTCTGCGTGGTCTGCTTCTCCGTATCCGACCGGTGGCGCGCCGCTGGTGGAGGCACTGGCGGCGCTGCCGCCCGC

CTTTCTGGTGGCTGCCGCGGCGCTGCTCGGGCTGGTGGTCGGCAGCTTCCTCAACGTGGTCATCCACCGGATGCCGCGCA

TGATGGAGCGCGACGAGGCCAACTATATCGCCGAGCTGCGCGGCGACCCGCTGCCCCACCCCGGCCGCTACAACCTGATG

GTGCCGCGCTCGGCCTGCCCGCATTGCGGCCACGCGATTGCACCCTGGGAGAACGTGCCGGTGCTGAGCTACCTGTTCCT

GCGCGGGCGCTGCTCGGCATGCAAGGCGCCGATCAGTGTGCGCTATCCGCTGGTCGAGCTGGCCTGTGGCGTGCTGAGCG

CGCTGGTGGCGTGGCGCTTCGGCCCCGGCGGACAGGCCCTGGCCGCGCTGGTGCTGGTGTGGGCGCTGCTGGCGCTGACC

ATGATCGATGCCGATACGCAACTGTTGCCGGACCAGATCACCCTGCCGCTGCTGTGGCTGGGCCTGCTGCTGAACCTGGG

CGGCGTCTTCGTGGCGCTGCCCGACGCCGTGATCGGCGCGGCTGCCGGCTACCTGGTGCTGTGGACGGCCTACTGGCTGT

TCCGGCTCGTGCGCGGCAAGGAAGGCATGGGCTTTGGCGACTTCAAGCTGATGGCGGCGCTGGGCGCCTGGTTCGGCTGG

CAGGCGCTGCCGGCGCTGGTGCTGCTGTCGTCGGTGGTCGGCGTGCTGTTCGGGCTGGCCAATATTGTGCTGCGCCGCCA

GGAACGCGACACGCCCTTCCCGTTCGGACCCTTCATCGCGCTGGCCGGGGTGGTGGTGCTGCTGTTCGGCCCCGGCGTGC

TGCCGCTGTTTGCATGGCCCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(35-140)

Type IV leader peptidase family (Peptidase_A24)

(150-259)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	G0EX70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	55.849	88.333	0.493
pilD	Vibrio campbellii strain DS40M4	51.095	91.333	0.467
pilD	Neisseria gonorrhoeae MS11	48.239	94.667	0.457
pilD	Acinetobacter baumannii D1279779	47.601	90.333	0.43
pilD	Acinetobacter nosocomialis M2	47.232	90.333	0.427

Detailed information NTG0559879