Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KDB76_RS08445 Genome accession   NZ_CP073661
Coordinates   1830031..1832244 (+) Length   737 a.a.
NCBI ID   WP_038410377.1    Uniprot ID   -
Organism   Pseudomonas sp. JS425     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825031..1837244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDB76_RS08425 (KDB76_08425) - 1826896..1827519 (+) 624 WP_024086519.1 glutathione S-transferase -
  KDB76_RS08430 (KDB76_08430) - 1827664..1828596 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  KDB76_RS08435 (KDB76_08435) - 1828593..1829372 (+) 780 WP_003260104.1 ABC transporter permease -
  KDB76_RS08440 (KDB76_08440) - 1829382..1829888 (-) 507 Protein_1652 DUF2062 domain-containing protein -
  KDB76_RS08445 (KDB76_08445) comA 1830031..1832244 (+) 2214 WP_038410377.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KDB76_RS08450 (KDB76_08450) - 1832345..1832509 (-) 165 WP_212632291.1 hypothetical protein -
  KDB76_RS08455 (KDB76_08455) exbB 1832463..1833098 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KDB76_RS08460 (KDB76_08460) - 1833095..1833529 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  KDB76_RS08465 (KDB76_08465) lpxK 1833529..1834530 (+) 1002 WP_013971565.1 tetraacyldisaccharide 4'-kinase -
  KDB76_RS08470 (KDB76_08470) - 1834575..1834760 (+) 186 WP_011532874.1 Trm112 family protein -
  KDB76_RS08475 (KDB76_08475) kdsB 1834757..1835521 (+) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KDB76_RS08480 (KDB76_08480) - 1835521..1835985 (+) 465 WP_013971567.1 low molecular weight protein-tyrosine-phosphatase -
  KDB76_RS08485 (KDB76_08485) murB 1835982..1837001 (+) 1020 WP_023662429.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79458.30 Da        Isoelectric Point: 10.6562

>NTDB_id=559803 KDB76_RS08445 WP_038410377.1 1830031..1832244(+) (comA) [Pseudomonas sp. JS425]
MRTGMFALALGLLCLGFLPALPSVGWLVLLAVAGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDTLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALVAVLLLEPL
AALLPGFWLSFAAVATLVYCFSARLGNWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLALAAQQPAWLPPAVPLWAWLLVCLGALLVLMPRGVPLRGLGGVMLLALWV
PRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAGA
IIRGLPVKRVIGGEVLDEMRLQPCASGEQWTWDGVRFSLWRWADGQSSNDRSCALLVEAQGERLLLAGDMEAGAERAWLA
ATEAPRIDWLQSPHHGSRSSSSEAFIRATAPREVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLGE
VESVRRQRRFWRDAGGG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=559803 KDB76_RS08445 WP_038410377.1 1830031..1832244(+) (comA) [Pseudomonas sp. JS425]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGCATTGCCATCTGTCGGATGGCT
AGTGCTGCTGGCTGTAGCCGGTGGCCTCGGCCTGTTCACGCGGCTGTGGCCGCTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCCCTGGATGACCGCCTGGCCACCGGGCTGGATGGTCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGCCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTGGA
CGCCAATGGCCGGCAGGCAGCGTTGGTGGCGCTGGTGCTTGGCGACGGCGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCACATCGGCTTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGTCTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
TGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGACCTTGCCGTTGTTGCTGGCGCTGGTTGCCGTACTGTTGCTGGAACCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTATCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAA
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGTTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCGTGGGTCAGCTTGGCAGTGCTGCCATTGGCGTTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCGCTGCTCTGGCTGGCGGGTGGTTTGCTTGATGTGCTTTT
CCGGCTGCTGGCGCTGGCGGCCCAGCAGCCGGCGTGGCTGCCACCAGCCGTGCCGTTGTGGGCCTGGCTGCTGGTGTGCC
TGGGTGCGCTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGGGTA
CCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCGGTGCTGTTGCGCAC
TCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGACCT
TGCGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGTGCA
ATCATACGTGGCCTGCCGGTCAAGCGGGTAATCGGCGGCGAAGTGCTGGATGAAATGCGACTGCAACCTTGTGCCAGTGG
CGAGCAATGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGACAGAGCAGCAATGACCGCTCCTGTG
CGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGATATGGAAGCCGGTGCCGAACGGGCCTGGCTGGCG
GCCACAGAAGCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCATCCG
CGCCACGGCGCCGCGCGAGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCGAAC
GTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGGGAG
GTCGAGAGTGTGCGCCGACAGCGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-673)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.558

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.904

100

0.372