Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KDB76_RS08455 Genome accession   NZ_CP073661
Coordinates   1832463..1833098 (+) Length   211 a.a.
NCBI ID   WP_003259970.1    Uniprot ID   V9UW47
Organism   Pseudomonas sp. JS425     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827463..1838098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDB76_RS08430 (KDB76_08430) - 1827664..1828596 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  KDB76_RS08435 (KDB76_08435) - 1828593..1829372 (+) 780 WP_003260104.1 ABC transporter permease -
  KDB76_RS08440 (KDB76_08440) - 1829382..1829888 (-) 507 Protein_1652 DUF2062 domain-containing protein -
  KDB76_RS08445 (KDB76_08445) comA 1830031..1832244 (+) 2214 WP_038410377.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KDB76_RS08450 (KDB76_08450) - 1832345..1832509 (-) 165 WP_212632291.1 hypothetical protein -
  KDB76_RS08455 (KDB76_08455) exbB 1832463..1833098 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KDB76_RS08460 (KDB76_08460) - 1833095..1833529 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  KDB76_RS08465 (KDB76_08465) lpxK 1833529..1834530 (+) 1002 WP_013971565.1 tetraacyldisaccharide 4'-kinase -
  KDB76_RS08470 (KDB76_08470) - 1834575..1834760 (+) 186 WP_011532874.1 Trm112 family protein -
  KDB76_RS08475 (KDB76_08475) kdsB 1834757..1835521 (+) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KDB76_RS08480 (KDB76_08480) - 1835521..1835985 (+) 465 WP_013971567.1 low molecular weight protein-tyrosine-phosphatase -
  KDB76_RS08485 (KDB76_08485) murB 1835982..1837001 (+) 1020 WP_023662429.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=559804 KDB76_RS08455 WP_003259970.1 1832463..1833098(+) (exbB) [Pseudomonas sp. JS425]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRVSRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=559804 KDB76_RS08455 WP_003259970.1 1832463..1833098(+) (exbB) [Pseudomonas sp. JS425]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGTCAGTCGCGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGATATGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCTGATTCGCCATTGGGCGAAATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGTATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829