Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KEC47_RS11430 Genome accession   NZ_CP073656
Coordinates   2436190..2436525 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y816     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2431190..2441525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC47_RS11410 (KEC47_11410) gcvT 2431800..2432900 (-) 1101 WP_176283424.1 glycine cleavage system aminomethyltransferase GcvT -
  KEC47_RS11415 (KEC47_11415) - 2433324..2434994 (+) 1671 WP_060562612.1 SNF2-related protein -
  KEC47_RS11420 (KEC47_11420) - 2435012..2435806 (+) 795 WP_014305407.1 YqhG family protein -
  KEC47_RS11425 (KEC47_11425) sinI 2435983..2436156 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  KEC47_RS11430 (KEC47_11430) sinR 2436190..2436525 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KEC47_RS11435 (KEC47_11435) - 2436573..2437358 (-) 786 WP_007408329.1 TasA family protein -
  KEC47_RS11440 (KEC47_11440) - 2437422..2438006 (-) 585 WP_012117977.1 signal peptidase I -
  KEC47_RS11445 (KEC47_11445) tapA 2437978..2438649 (-) 672 WP_070082109.1 amyloid fiber anchoring/assembly protein TapA -
  KEC47_RS11450 (KEC47_11450) - 2438908..2439237 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  KEC47_RS11455 (KEC47_11455) - 2439277..2439456 (-) 180 WP_003153093.1 YqzE family protein -
  KEC47_RS11460 (KEC47_11460) comGG 2439513..2439890 (-) 378 WP_077722592.1 competence type IV pilus minor pilin ComGG Machinery gene
  KEC47_RS11465 (KEC47_11465) comGF 2439891..2440286 (-) 396 WP_077722593.1 competence type IV pilus minor pilin ComGF -
  KEC47_RS11470 (KEC47_11470) comGE 2440300..2440614 (-) 315 WP_077722594.1 competence type IV pilus minor pilin ComGE Machinery gene
  KEC47_RS11475 (KEC47_11475) comGD 2440598..2441035 (-) 438 WP_077722595.1 competence type IV pilus minor pilin ComGD Machinery gene
  KEC47_RS11480 (KEC47_11480) comGC 2441025..2441333 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=559735 KEC47_RS11430 WP_003153104.1 2436190..2436525(+) (sinR) [Bacillus velezensis strain Y816]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=559735 KEC47_RS11430 WP_003153104.1 2436190..2436525(+) (sinR) [Bacillus velezensis strain Y816]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991