Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSYCIT7_RS07790 Genome accession   NZ_CP073636
Coordinates   1713900..1716116 (+) Length   738 a.a.
NCBI ID   WP_072365755.1    Uniprot ID   A0A8T8M1U3
Organism   Pseudomonas syringae Cit 7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1708900..1721116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYCIT7_RS07775 (PSYCIT7_007775) - 1711239..1711862 (+) 624 WP_003368376.1 glutathione S-transferase -
  PSYCIT7_RS07780 (PSYCIT7_007780) - 1712046..1712978 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  PSYCIT7_RS07785 (PSYCIT7_007785) - 1712975..1713763 (+) 789 WP_003368378.1 ABC transporter permease -
  PSYCIT7_RS07790 (PSYCIT7_007790) comA 1713900..1716116 (+) 2217 WP_072365755.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYCIT7_RS07795 (PSYCIT7_007795) exbB 1716159..1716875 (+) 717 WP_080479516.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYCIT7_RS07800 (PSYCIT7_007800) - 1716872..1717303 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  PSYCIT7_RS07805 (PSYCIT7_007805) lpxK 1717303..1718298 (+) 996 WP_003368385.1 tetraacyldisaccharide 4'-kinase -
  PSYCIT7_RS07810 (PSYCIT7_007810) - 1718316..1718501 (+) 186 WP_002552679.1 Trm112 family protein -
  PSYCIT7_RS07815 (PSYCIT7_007815) kdsB 1718498..1719262 (+) 765 WP_003368388.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYCIT7_RS07820 (PSYCIT7_007820) murB 1719297..1720316 (+) 1020 WP_080479518.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80290.55 Da        Isoelectric Point: 10.4734

>NTDB_id=559647 PSYCIT7_RS07790 WP_072365755.1 1713900..1716116(+) (comA) [Pseudomonas syringae Cit 7]
MRTGMIALALGLLALRFLPALPPTWLLLLMPILALMLLPFRTYPLALLLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELESATSRRARLPARIRVAWYGGQPVSSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGMPVRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPNGNPASCILSVDAGGERLLLAGDIDVSAE
RAAMDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=559647 PSYCIT7_RS07790 WP_072365755.1 1713900..1716116(+) (comA) [Pseudomonas syringae Cit 7]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGTTGCCGCCGACCTGGCTATT
GCTGTTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTCCGTACCTATCCACTGGCGTTGCTCCTGCTCGGTTTCACTT
GGGCCTGCGTGTCGGCGCAGTGGGCGTTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTGCAGGGC
AAGGTGGTCGGTTTACCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAACTGGAAAGTGCCACGTCACGACGTGCCAGGCT
GCCCGCGCGAATCAGGGTGGCCTGGTACGGCGGCCAGCCGGTGAGCAGCGGCGAGCGCTGGCGTATGGCGGTCAAACTCA
AGCGACCGGCCGGGCTGGTCAATCCGGATGCTTTCGACTATGAAGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTAGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGTGAGGGTGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGGCTATCGAGCACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGTCAGCACATCGGGTTGCTGGCCGGGGTGATTTACGCCTTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCGCGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACACGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCAGCGGTCGGCATTCTGATCCTGATTTTTAGCGGACGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTTGGCTTGTTGCCGATCCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGTGGGCCGTTTGCCAACTTGCTTGCCGTCCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCGGTCCCTGTGGTCGGTGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCTGTGGCTGCCGCATTGCCGGCCTGGCTACCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGCC
TGCTCGGGGCCTTGCTCTTGTTGCTGCCCAAGGGCATGCCCGTGCGGCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCACTCGAATCAGTGCCTGAAGGCCAGGTGGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACCCGCAACCACACACTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGTGTCCGCCATCTCGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGAGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGCGCCGCAACTCGATGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTAATGGCA
ATCCAGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCCGGCGATATCGATGTGAGCGCCGAG
CGCGCGGCGATGGACAGCGGGTTCGACCTTCGTGCTCACTGGTTGCAGTCGCCACATCACGGCAGCCGGACCTCGTCGTC
CAAAGCGTTTCTGCGCGCCGTGGCACCGGTAGGCGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCGGTCCGCCTGCAACTG
GGGACGTTCGGAACGCCACAGGCGGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.872

97.019

0.6
  comA Ralstonia pseudosolanacearum GMI1000

35.35

100

0.404