Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSYCIT7_RS07795 Genome accession   NZ_CP073636
Coordinates   1716159..1716875 (+) Length   238 a.a.
NCBI ID   WP_080479516.1    Uniprot ID   A0A8T8M1H0
Organism   Pseudomonas syringae Cit 7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711159..1721875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYCIT7_RS07775 (PSYCIT7_007775) - 1711239..1711862 (+) 624 WP_003368376.1 glutathione S-transferase -
  PSYCIT7_RS07780 (PSYCIT7_007780) - 1712046..1712978 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  PSYCIT7_RS07785 (PSYCIT7_007785) - 1712975..1713763 (+) 789 WP_003368378.1 ABC transporter permease -
  PSYCIT7_RS07790 (PSYCIT7_007790) comA 1713900..1716116 (+) 2217 WP_072365755.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSYCIT7_RS07795 (PSYCIT7_007795) exbB 1716159..1716875 (+) 717 WP_080479516.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSYCIT7_RS07800 (PSYCIT7_007800) - 1716872..1717303 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  PSYCIT7_RS07805 (PSYCIT7_007805) lpxK 1717303..1718298 (+) 996 WP_003368385.1 tetraacyldisaccharide 4'-kinase -
  PSYCIT7_RS07810 (PSYCIT7_007810) - 1718316..1718501 (+) 186 WP_002552679.1 Trm112 family protein -
  PSYCIT7_RS07815 (PSYCIT7_007815) kdsB 1718498..1719262 (+) 765 WP_003368388.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSYCIT7_RS07820 (PSYCIT7_007820) murB 1719297..1720316 (+) 1020 WP_080479518.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25820.35 Da        Isoelectric Point: 7.9113

>NTDB_id=559648 PSYCIT7_RS07795 WP_080479516.1 1716159..1716875(+) (exbB) [Pseudomonas syringae Cit 7]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLGRAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=559648 PSYCIT7_RS07795 WP_080479516.1 1716159..1716875(+) (exbB) [Pseudomonas syringae Cit 7]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACCCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCGGAC
TCGCCGCTGGGTGAAATCCTGGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCGCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCCACCGCCAACGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCAATCTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCATGGAGCAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGACCTCAAGTCGCTGGGCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693