Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KEF49_RS11585 Genome accession   NZ_CP073635
Coordinates   2325044..2326774 (-) Length   576 a.a.
NCBI ID   WP_115997625.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2320044..2331774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS11560 (KEF49_11560) - 2320413..2320625 (+) 213 WP_014470647.1 spore germination protein -
  KEF49_RS11565 (KEF49_11565) - 2320750..2320962 (+) 213 WP_013352823.1 spore germination protein -
  KEF49_RS11570 (KEF49_11570) alr 2321148..2322329 (+) 1182 WP_212098435.1 alanine racemase -
  KEF49_RS19805 - 2322390..2322524 (+) 135 WP_258415239.1 hypothetical protein -
  KEF49_RS11575 (KEF49_11575) spo0A 2322519..2323319 (-) 801 WP_045510705.1 sporulation transcription factor Spo0A Regulator
  KEF49_RS11580 (KEF49_11580) spoIVB 2323600..2324880 (-) 1281 WP_115997624.1 SpoIVB peptidase -
  KEF49_RS11585 (KEF49_11585) recN 2325044..2326774 (-) 1731 WP_115997625.1 DNA repair protein RecN Machinery gene
  KEF49_RS11590 (KEF49_11590) argR 2326806..2327255 (-) 450 WP_013352828.1 transcriptional regulator ArgR -
  KEF49_RS11595 (KEF49_11595) - 2327352..2328197 (-) 846 WP_065522788.1 TlyA family RNA methyltransferase -
  KEF49_RS11600 (KEF49_11600) dxs 2328194..2330095 (-) 1902 WP_115997626.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KEF49_RS11605 (KEF49_11605) - 2330239..2331129 (-) 891 WP_065981859.1 polyprenyl synthetase family protein -
  KEF49_RS11610 (KEF49_11610) - 2331119..2331373 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64023.91 Da        Isoelectric Point: 4.7620

>NTDB_id=559591 KEF49_RS11585 WP_115997625.1 2325044..2326774(-) (recN) [Bacillus amyloliquefaciens strain Ba13]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEILQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSAGEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTRVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=559591 KEF49_RS11585 WP_115997625.1 2325044..2326774(-) (recN) [Bacillus amyloliquefaciens strain Ba13]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCTGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTGATGGAGGACGACAAGCATTTAGAGCTTTTGGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGGGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATTGAATCGGCGAAGCTTGAATTGAATGAAGACGAGATTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCGACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACAGTA
GAAGATATTCTGGAATACGGCTCAAAAATAGAAGAGGAAATCGATCAAATCGAAAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACATTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCGGTGAAGCGCCGGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGTATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGTGAGCCTCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAGAGTATTTTTTCTTCCCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
CCCGCAGGTTGCCGCCATGGCGGACACGCACCTTTTGATCGCGAAGGAATTAAAAGACGGCCGGACGACAACGCGTGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.41

100

0.894