Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   KEM15_RS03110 Genome accession   NZ_CP073632
Coordinates   597453..598802 (+) Length   449 a.a.
NCBI ID   WP_217469406.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 592453..603802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS03085 (KEM15_03045) - 593515..594174 (-) 660 WP_274504672.1 amino acid ABC transporter permease -
  KEM15_RS03090 (KEM15_03050) - 594189..594887 (-) 699 WP_274504673.1 amino acid ABC transporter permease -
  KEM15_RS03095 (KEM15_03055) - 594901..595740 (-) 840 WP_217374820.1 transporter substrate-binding domain-containing protein -
  KEM15_RS03100 (KEM15_03060) - 595750..596511 (-) 762 WP_130554350.1 amino acid ABC transporter ATP-binding protein -
  KEM15_RS03105 (KEM15_03065) micA 596756..597460 (+) 705 WP_024391260.1 response regulator YycF Regulator
  KEM15_RS03110 (KEM15_03070) micB 597453..598802 (+) 1350 WP_217469406.1 cell wall metabolism sensor histidine kinase VicK Regulator
  KEM15_RS03115 (KEM15_03075) vicX 598809..599612 (+) 804 WP_217374822.1 MBL fold metallo-hydrolase Regulator
  KEM15_RS03120 (KEM15_03080) pbp2b 599888..601963 (+) 2076 WP_274504674.1 penicillin-binding protein PBP2B -
  KEM15_RS03125 (KEM15_03085) recR 601972..602568 (+) 597 WP_172036408.1 recombination mediator RecR -
  KEM15_RS03130 (KEM15_03090) - 602677..603723 (+) 1047 WP_217374823.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51032.42 Da        Isoelectric Point: 4.5615

>NTDB_id=559508 KEM15_RS03110 WP_217469406.1 597453..598802(+) (micB) [Streptococcus parasuis strain NN1]
MINQLRYLITTAEFWFVVILIGFLMALTVLLIENYRDNKQIQLLNKKVGALIDGNYSDVLDLRGSPEITEMANSLNDLSE
VIRLTHDNLEQEKIRLSSILSYMSDGVIATDRIGRIIMVNDMAQKQLGLKDHKQEQYFLLDVLELQDQYSLRELLSQTPE
IVLEKVNENQELLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALT
ESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGEMDVELINFTAFITFILNRFDQMKNSDVGKTYAIIRDYQISPIW
VEIDTDKMTQVLDNILNNAIKYSPDGGNITFSMKTTDSQLILSISDEGLGIPKADLPKIFDRFYRVDKARSRAQGGTGLG
LAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDIALDEWEEVAEEE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=559508 KEM15_RS03110 WP_217469406.1 597453..598802(+) (micB) [Streptococcus parasuis strain NN1]
ATGATTAATCAATTACGCTATCTAATTACAACAGCTGAATTTTGGTTTGTTGTTATTTTGATCGGATTTCTAATGGCGTT
GACAGTATTGTTGATAGAAAACTATCGTGACAATAAGCAGATTCAATTACTCAATAAAAAAGTTGGCGCCTTGATAGATG
GTAATTACTCTGATGTATTGGATTTGCGAGGAAGTCCAGAGATTACCGAAATGGCAAATTCACTGAATGATTTGTCAGAA
GTAATCCGTTTAACGCACGATAACCTAGAACAAGAAAAAATCCGGCTCAGTTCCATTCTTTCCTACATGAGTGATGGAGT
CATTGCTACAGATCGTATTGGCCGAATTATCATGGTCAATGATATGGCGCAGAAACAACTGGGGTTAAAAGATCATAAAC
AGGAGCAATATTTTTTACTTGATGTTCTAGAACTTCAAGACCAATATAGTCTGCGTGAGTTGCTATCTCAAACACCTGAA
ATCGTCTTAGAAAAAGTTAATGAGAATCAAGAATTACTGACCTTACGAGCTAATTTTGCAACGATTAGGAGTGAAAGTGG
GCTCATATCAGGGTTGGTTGTTGTCCTACATGATATGACGGAGCAGGCCAAGGAGGAACGTGAGCGCAGACTGTTTGTTT
CTAATGTCAGTCACGAATTGCGTACACCGTTGACCTCGGTTAAATCATATTTGGAAGCCTTGGATGAGGGAGCTCTGACC
GAATCGGTTGCCCCAAGTTTTGTCAAGGTATCCTTAGATGAAACCAACCGGATGATGCGGATGATTACAGATCTTTTAAG
TTTATCTCGCATTGATAATCAGGTTGGAGAGATGGATGTAGAGTTAATCAATTTTACAGCCTTTATCACTTTTATCTTGA
ATCGCTTTGATCAGATGAAGAATTCTGATGTTGGTAAGACCTACGCTATTATTCGTGATTACCAGATTAGTCCAATTTGG
GTTGAAATTGATACCGATAAGATGACGCAGGTACTGGATAATATTTTGAATAATGCTATCAAGTATTCTCCAGATGGGGG
AAACATTACCTTTAGTATGAAAACGACAGATAGTCAGCTTATTCTTTCTATTTCAGATGAAGGTTTGGGAATTCCTAAAG
CTGATTTACCTAAAATATTTGACCGTTTCTATCGAGTTGATAAAGCGCGTTCGAGAGCCCAAGGAGGCACAGGTTTAGGT
TTGGCGATTGCAAAAGAGATTGTAAAGCAACACAAAGGTTTCATTTGGGCTAAAAGTGAGTATGGACATGGTTCGACATT
TACGATTGTCTTACCATATAGTAAGGATATTGCACTGGATGAGTGGGAAGAGGTTGCTGAGGAAGAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(96-199)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

69.266

97.105

0.673
  vicK Streptococcus mutans UA159

69.727

89.755

0.626