Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   KEM15_RS03115 Genome accession   NZ_CP073632
Coordinates   598809..599612 (+) Length   267 a.a.
NCBI ID   WP_217374822.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 593809..604612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS03090 (KEM15_03050) - 594189..594887 (-) 699 WP_274504673.1 amino acid ABC transporter permease -
  KEM15_RS03095 (KEM15_03055) - 594901..595740 (-) 840 WP_217374820.1 transporter substrate-binding domain-containing protein -
  KEM15_RS03100 (KEM15_03060) - 595750..596511 (-) 762 WP_130554350.1 amino acid ABC transporter ATP-binding protein -
  KEM15_RS03105 (KEM15_03065) micA 596756..597460 (+) 705 WP_024391260.1 response regulator YycF Regulator
  KEM15_RS03110 (KEM15_03070) micB 597453..598802 (+) 1350 WP_217469406.1 cell wall metabolism sensor histidine kinase VicK Regulator
  KEM15_RS03115 (KEM15_03075) vicX 598809..599612 (+) 804 WP_217374822.1 MBL fold metallo-hydrolase Regulator
  KEM15_RS03120 (KEM15_03080) pbp2b 599888..601963 (+) 2076 WP_274504674.1 penicillin-binding protein PBP2B -
  KEM15_RS03125 (KEM15_03085) recR 601972..602568 (+) 597 WP_172036408.1 recombination mediator RecR -
  KEM15_RS03130 (KEM15_03090) - 602677..603723 (+) 1047 WP_217374823.1 D-alanine--D-alanine ligase -
  KEM15_RS03135 (KEM15_03095) - 603836..604216 (+) 381 WP_172025425.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29611.58 Da        Isoelectric Point: 5.3289

>NTDB_id=559509 KEM15_RS03115 WP_217374822.1 598809..599612(+) (vicX) [Streptococcus parasuis strain NN1]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTTKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=559509 KEM15_RS03115 WP_217374822.1 598809..599612(+) (vicX) [Streptococcus parasuis strain NN1]
ATGATCGGAACTGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGAAAAAAAATCACTAGTCTTTTGGCAGAAATTGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTGTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCGCCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTAGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGTTTTATGAAAGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCTTATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCTGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCACTAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACAGCGACTGTATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772