Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KEM15_RS01945 Genome accession   NZ_CP073632
Coordinates   371086..371580 (+) Length   164 a.a.
NCBI ID   WP_274504567.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 366086..376580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS01920 (KEM15_01895) - 366902..367501 (+) 600 WP_274504563.1 histidine phosphatase family protein -
  KEM15_RS01925 (KEM15_01900) - 367513..368115 (+) 603 WP_274504564.1 histidine phosphatase family protein -
  KEM15_RS01930 (KEM15_01905) - 368130..369569 (+) 1440 WP_274504565.1 6-phospho-beta-glucosidase -
  KEM15_RS01935 (KEM15_01910) - 369653..370642 (+) 990 WP_274504566.1 lipoate--protein ligase -
  KEM15_RS01940 (KEM15_01915) rpsF 370784..371074 (+) 291 WP_171989335.1 30S ribosomal protein S6 -
  KEM15_RS01945 (KEM15_01920) ssb 371086..371580 (+) 495 WP_274504567.1 single-stranded DNA-binding protein Machinery gene
  KEM15_RS01950 (KEM15_01925) rpsR 371613..371852 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  KEM15_RS01955 (KEM15_01930) - 372309..372965 (-) 657 WP_130554636.1 DUF1129 family protein -
  KEM15_RS01960 (KEM15_01935) - 372981..373925 (-) 945 WP_024391538.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18143.92 Da        Isoelectric Point: 4.7294

>NTDB_id=559502 KEM15_RS01945 WP_274504567.1 371086..371580(+) (ssb) [Streptococcus parasuis strain NN1]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQTTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=559502 KEM15_RS01945 WP_274504567.1 371086..371580(+) (ssb) [Streptococcus parasuis strain NN1]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGTGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGGCAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTATTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGGGGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAAACTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366