Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   KDW96_RS08595 Genome accession   NZ_CP073346
Coordinates   1825311..1826036 (+) Length   241 a.a.
NCBI ID   WP_255840003.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain D13-4     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820311..1831036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDW96_RS08570 (KDW96_08540) - 1821677..1822645 (-) 969 WP_255839998.1 mechanosensitive ion channel family protein -
  KDW96_RS08575 (KDW96_08545) - 1822810..1823439 (+) 630 WP_255839999.1 glutaredoxin -
  KDW96_RS08580 (KDW96_08550) - 1823469..1824239 (+) 771 WP_255840000.1 phytanoyl-CoA dioxygenase family protein -
  KDW96_RS08585 (KDW96_08555) - 1824340..1824726 (+) 387 WP_255840001.1 hypothetical protein -
  KDW96_RS08590 (KDW96_08560) - 1824840..1825184 (+) 345 WP_255840002.1 zinc ribbon domain-containing protein YjdM -
  KDW96_RS08595 (KDW96_08565) ideA 1825311..1826036 (+) 726 WP_255840003.1 endonuclease Regulator
  KDW96_RS08600 (KDW96_08570) - 1826157..1826894 (+) 738 WP_255840004.1 ABC transporter substrate-binding protein -
  KDW96_RS08605 (KDW96_08575) - 1826924..1828906 (-) 1983 WP_255840005.1 diguanylate cyclase -
  KDW96_RS08610 (KDW96_08580) - 1829217..1830023 (+) 807 WP_255840006.1 NYN domain-containing protein -
  KDW96_RS08615 (KDW96_08585) leuD 1830119..1830772 (-) 654 WP_255840007.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27420.28 Da        Isoelectric Point: 9.8969

>NTDB_id=559093 KDW96_RS08595 WP_255840003.1 1825311..1826036(+) (ideA) [Pseudomonas benzenivorans strain D13-4]
MPRLLVLLCLLFTLPVHAEAPQSFSAAKKIAWKLYAQQQTTFYCGCAYEGNRVDLASCGYQPRKQLRRAQRLEWEHVVPA
WVIGHQRQCWQQGGRKNCSRNDPVFRAAEADLHNLVPSIGELNGDRSNYALGMLGAAPDQYGACPMRVDFKARTAMPPVP
ARGAAARIYLYMADHYRLRLSRQDRRTYEAWHRQYPVSAWERWRNQRVGCVMGHGNPYVGAVDQRACTPQQRAGTFHSSN
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=559093 KDW96_RS08595 WP_255840003.1 1825311..1826036(+) (ideA) [Pseudomonas benzenivorans strain D13-4]
ATGCCCCGCCTGCTTGTCCTGCTATGCCTGCTGTTCACCCTCCCCGTCCACGCCGAAGCCCCGCAGTCCTTCTCCGCCGC
CAAGAAGATCGCCTGGAAGCTCTATGCCCAGCAGCAGACCACCTTCTATTGTGGTTGCGCCTATGAGGGCAACCGCGTGG
ACCTGGCCAGTTGCGGCTACCAGCCGCGCAAGCAGCTGCGTCGCGCCCAGCGCCTGGAGTGGGAACACGTGGTCCCGGCC
TGGGTGATCGGCCACCAGCGCCAGTGCTGGCAGCAGGGCGGGCGCAAGAACTGCAGCCGCAACGATCCAGTATTCCGCGC
CGCCGAAGCCGACCTGCACAACCTGGTGCCGAGCATCGGCGAGCTGAACGGCGACCGCTCCAACTACGCCCTCGGCATGC
TCGGCGCCGCGCCCGACCAGTACGGCGCCTGCCCGATGCGCGTCGACTTCAAAGCCAGGACCGCCATGCCCCCGGTGCCG
GCGCGCGGCGCCGCGGCGCGCATCTACCTGTACATGGCCGATCACTACCGCCTGCGCCTGTCGCGCCAGGACCGCCGCAC
CTACGAGGCCTGGCACCGCCAGTACCCGGTCAGCGCCTGGGAGCGCTGGCGCAACCAGCGGGTCGGCTGCGTCATGGGCC
ACGGCAACCCCTACGTAGGCGCCGTCGATCAGCGGGCCTGCACGCCGCAGCAGCGCGCCGGCACTTTCCATTCGTCCAAC
GGCTGA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(34-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

55.251

90.871

0.502
  dns Vibrio parahaemolyticus RIMD 2210633

51.064

97.51

0.498
  dns Vibrio cholerae strain A1552

54.054

92.116

0.498
  dns Aliivibrio fischeri ES114

51.77

93.776

0.485