Detailed information NTG0559085

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KDW96_RS03480
• Genome accession: NZ_CP073346
• Coordinates: 760723..762948 (-)
• Length: 741 a.a.
• NCBI ID: WP_255839023.1
• Uniprot ID: -
• Organism: Pseudomonas benzenivorans strain D13-4
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 755723..767948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KDW96_RS03445 (KDW96_03430)	murB	756086..757105 (-)	1020	WP_255839016.1	UDP-N-acetylmuramate dehydrogenase	-
KDW96_RS03450 (KDW96_03435)	-	757102..757566 (-)	465	WP_255839017.1	low molecular weight protein-tyrosine-phosphatase	-
KDW96_RS03455 (KDW96_03440)	kdsB	757566..758330 (-)	765	WP_255839018.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KDW96_RS03460 (KDW96_03445)	-	758331..758516 (-)	186	WP_255839019.1	Trm112 family protein	-
KDW96_RS03465 (KDW96_03450)	lpxK	758575..759579 (-)	1005	WP_255839020.1	tetraacyldisaccharide 4'-kinase	-
KDW96_RS03470 (KDW96_03455)	-	759593..760021 (-)	429	WP_255839021.1	biopolymer transporter ExbD	-
KDW96_RS03475 (KDW96_03460)	exbB	760018..760650 (-)	633	WP_255839022.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
KDW96_RS03480 (KDW96_03465)	comA	760723..762948 (-)	2226	WP_255839023.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KDW96_RS03485 (KDW96_03470)	-	763086..763619 (+)	534	WP_255839024.1	DUF2062 domain-containing protein	-
KDW96_RS03490 (KDW96_03475)	-	763671..764915 (-)	1245	WP_255839028.1	lipoprotein-releasing ABC transporter permease subunit	-
KDW96_RS03495 (KDW96_03480)	lolD	764915..765598 (-)	684	WP_255840620.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
KDW96_RS03500 (KDW96_03485)	-	765621..766871 (-)	1251	WP_255839029.1	lipoprotein-releasing ABC transporter permease subunit	-
KDW96_RS03505 (KDW96_03490)	-	766967..767539 (+)	573	WP_255839030.1	PilZ domain-containing protein	-
KDW96_RS03510 (KDW96_03495)	-	767557..767850 (+)	294	WP_255839031.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 79925.04 Da
• Isoelectric Point: 10.5223

>NTDB_id=559085 KDW96_RS03480 WP_255839023.1 760723..762948(-) (comA) [Pseudomonas benzenivorans strain D13-4]
MRLGMVALIAGLLVLRFLPALPPVWLACLLALAGLLCLPSRAYPCGFFLIGFGWACASAQWALDDRLAPELDGRTLWLEG
QVVGLPEVSDGVVRFQLQHAASRRAVLPTRMRLAWYDGPPVRGGETWRLAVRLKRPHGLVNPHSFDYEAWLLGQRIGATG
TVKSGRRVEAAAGPPAWRDALRQRLLGSDALGRAGALAALVLGDGSGLSAADWRLLQDTGTIHLMVISGQHIALMAGLLY
GLVAGLARWGCWPRGWPWLPAACSLAFAGALGYGMLAGFEVPVRRACVMVGLVLLWRWRFRQLGVWLPLLVALALVLLVE
PLASLQAGFWLSFAAVGLLILIFGGRLGAWSWWHSLGRAQWGMAIGLLPVLLALGLPVSSSAPLANLIAVPWVGILVVPL
ALLGTLLLPVPWLGSALLWLAGGALELLFRLLTLIASGLPAWLPSTLSVWSWLLVALGALLLLLPAGVPMRSLGWFLLLP
LLCSPQPRPPAGQAEVWVLDVGQGLAVLLRTREHALLYDAGPRFGEFDMGERVVLPSLRALDVRRLDLMLLSHADNDHAG
GAQAIVQGLSVRQVWSGEAGALPASLGAEPCESGRNWQWDGVRFTLWRWARAGDSNQASCVLLVEAAGERLLLTGDIDSN
AERALLASGMNLRADWLLAPHHGSRSSSSSAFVRAVAPSAVLISRGRHNAFGHPHPIVLARYGALPAKLHDTVEQGALRL
RLGTFGEARGLRDERRFWRQK

Nucleotide

• Length: 2226 bp

>NTDB_id=559085 KDW96_RS03480 WP_255839023.1 760723..762948(-) (comA) [Pseudomonas benzenivorans strain D13-4]
ATGCGCCTAGGGATGGTCGCACTGATCGCAGGCCTGCTCGTGCTGCGTTTCTTGCCGGCGCTGCCGCCGGTCTGGCTGGC
CTGTCTGCTGGCGCTGGCGGGCCTCCTGTGCCTGCCGTCGCGCGCCTATCCGTGCGGGTTCTTTCTGATTGGCTTCGGCT
GGGCCTGTGCCTCGGCTCAGTGGGCGCTGGACGACCGCCTGGCGCCTGAGCTGGACGGCCGCACGCTGTGGTTAGAGGGA
CAGGTCGTCGGCTTGCCCGAGGTGAGTGACGGCGTGGTGCGCTTCCAGCTGCAGCACGCCGCCTCGCGCCGCGCCGTGTT
GCCCACGCGCATGCGCCTGGCCTGGTACGACGGGCCGCCCGTGCGCGGCGGCGAAACCTGGCGTCTGGCCGTGCGTCTCA
AGCGTCCCCACGGCCTGGTCAACCCGCACTCCTTCGACTACGAAGCCTGGCTGCTGGGTCAGCGCATCGGCGCCACCGGC
ACGGTGAAGAGTGGGCGCCGGGTAGAGGCGGCCGCCGGCCCGCCAGCCTGGCGCGATGCCTTGCGTCAGCGCCTGCTGGG
CAGCGACGCCCTTGGTCGGGCGGGCGCGTTGGCGGCCCTGGTGCTCGGTGACGGTTCGGGATTGTCGGCAGCGGACTGGC
GGCTACTACAGGACACCGGAACCATTCACCTGATGGTGATCTCCGGCCAACATATTGCCCTGATGGCCGGGCTGCTCTAC
GGGCTGGTCGCCGGGCTGGCGCGCTGGGGTTGCTGGCCGCGAGGCTGGCCCTGGTTGCCCGCCGCCTGCAGCCTGGCCTT
TGCCGGTGCCCTGGGCTACGGGATGCTGGCCGGGTTCGAGGTGCCGGTGCGCCGCGCCTGTGTGATGGTCGGGCTGGTGT
TGCTGTGGCGCTGGCGCTTTCGCCAACTGGGCGTCTGGTTGCCGCTGTTGGTCGCCCTGGCCCTGGTGCTGTTGGTCGAG
CCCCTGGCCAGCCTGCAGGCGGGCTTCTGGTTGTCGTTCGCGGCAGTTGGCCTGCTGATCCTGATCTTTGGCGGCCGTCT
GGGAGCCTGGTCCTGGTGGCATAGCCTGGGGCGGGCGCAGTGGGGGATGGCGATCGGTCTGCTGCCGGTACTGCTGGCGC
TGGGCCTGCCGGTCAGTTCCAGTGCGCCGCTGGCCAATCTGATTGCCGTGCCCTGGGTCGGCATTCTTGTGGTGCCGCTG
GCCCTGCTCGGCACCTTGCTGCTGCCTGTGCCCTGGCTGGGCAGCGCGCTGTTGTGGCTGGCTGGCGGCGCCCTCGAGCT
GCTGTTTCGATTGCTGACGCTGATCGCGAGCGGATTGCCGGCCTGGCTCCCCAGCACGCTGTCGGTCTGGTCCTGGCTGC
TGGTGGCGCTCGGGGCCTTGCTGTTGCTGTTGCCCGCCGGTGTCCCCATGCGCAGCCTCGGTTGGTTCCTGCTGCTGCCC
TTGCTGTGCAGTCCGCAGCCGCGCCCACCCGCCGGCCAGGCCGAGGTCTGGGTACTGGATGTGGGGCAGGGCCTGGCCGT
GCTGCTGCGCACCCGTGAACATGCCTTGCTGTATGACGCCGGACCGCGTTTCGGCGAATTCGATATGGGCGAGCGCGTGG
TACTGCCTTCGCTGCGTGCCCTGGATGTGCGGCGCCTCGACCTGATGCTGCTCAGCCATGCTGACAACGACCATGCCGGC
GGCGCGCAGGCGATCGTGCAAGGCTTGTCGGTCCGGCAGGTGTGGAGCGGCGAGGCCGGCGCCTTGCCGGCCAGCCTGGG
GGCCGAGCCCTGTGAATCTGGGCGCAACTGGCAGTGGGATGGGGTGCGCTTTACCCTGTGGCGCTGGGCCCGGGCCGGCG
ACAGCAACCAGGCCTCCTGCGTACTGCTGGTCGAGGCCGCGGGCGAGCGGCTGTTGCTCACCGGCGATATCGACAGCAAC
GCCGAGCGGGCCCTGCTTGCCAGTGGCATGAATCTGCGTGCCGACTGGCTGCTGGCGCCTCACCACGGCAGTCGCAGCTC
CTCCTCGAGCGCGTTTGTGCGCGCGGTGGCGCCCAGCGCCGTGCTGATTTCCCGCGGCCGGCACAATGCCTTCGGCCATC
CCCACCCCATCGTGCTGGCCCGCTATGGGGCGTTGCCCGCGAAGTTGCATGACACGGTGGAGCAGGGTGCCCTGCGACTG
CGCCTGGGCACCTTCGGCGAGGCACGCGGGCTGCGCGACGAGCGCCGATTCTGGAGACAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-681)

• Competence protein (Competence) (200-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	68.392	96.491	0.66
comA	Ralstonia pseudosolanacearum GMI1000	36.647	100	0.413