Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KDW96_RS03475 Genome accession   NZ_CP073346
Coordinates   760018..760650 (-) Length   210 a.a.
NCBI ID   WP_255839022.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain D13-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755018..765650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDW96_RS03445 (KDW96_03430) murB 756086..757105 (-) 1020 WP_255839016.1 UDP-N-acetylmuramate dehydrogenase -
  KDW96_RS03450 (KDW96_03435) - 757102..757566 (-) 465 WP_255839017.1 low molecular weight protein-tyrosine-phosphatase -
  KDW96_RS03455 (KDW96_03440) kdsB 757566..758330 (-) 765 WP_255839018.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KDW96_RS03460 (KDW96_03445) - 758331..758516 (-) 186 WP_255839019.1 Trm112 family protein -
  KDW96_RS03465 (KDW96_03450) lpxK 758575..759579 (-) 1005 WP_255839020.1 tetraacyldisaccharide 4'-kinase -
  KDW96_RS03470 (KDW96_03455) - 759593..760021 (-) 429 WP_255839021.1 biopolymer transporter ExbD -
  KDW96_RS03475 (KDW96_03460) exbB 760018..760650 (-) 633 WP_255839022.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KDW96_RS03480 (KDW96_03465) comA 760723..762948 (-) 2226 WP_255839023.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KDW96_RS03485 (KDW96_03470) - 763086..763619 (+) 534 WP_255839024.1 DUF2062 domain-containing protein -
  KDW96_RS03490 (KDW96_03475) - 763671..764915 (-) 1245 WP_255839028.1 lipoprotein-releasing ABC transporter permease subunit -
  KDW96_RS03495 (KDW96_03480) lolD 764915..765598 (-) 684 WP_255840620.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22817.06 Da        Isoelectric Point: 8.5099

>NTDB_id=559084 KDW96_RS03475 WP_255839022.1 760018..760650(-) (exbB) [Pseudomonas benzenivorans strain D13-4]
MWELVKAGGWMMLPIVLCSIAAAGIIAERLWTLRPSRITPPNLLGQVWRWIKDKKLNNQKLKELRADSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPVLAGGIAKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLSEAKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=559084 KDW96_RS03475 WP_255839022.1 760018..760650(-) (exbB) [Pseudomonas benzenivorans strain D13-4]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCAATCGTTCTGTGCTCTATCGCCGCGGCCGGCATCATTGC
CGAACGCCTGTGGACTCTGCGACCCAGTCGCATCACCCCGCCCAATCTGCTCGGTCAGGTGTGGCGCTGGATCAAAGACA
AGAAGCTGAACAACCAGAAGCTCAAGGAGCTGCGCGCCGATTCGCCCCTGGGGCAGATCCTGGCGGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAAGCAGCTGCGCGGGTCATCCACGAACTGGAGCGCTACCT
AAACGCGCTCGGCACCATTGCCGGGATCGCACCGCTGCTCGGCCTGCTCGGCACCGTGTTGGGCATGATCGAGATTTTCA
GCTCCTTCATGGGTTCGGGCATGGCCAATGCGCCGGTGCTGGCCGGGGGTATCGCCAAGGCGTTGATCACCACGGCCGCC
GGCCTGATGGTGGCCATTCCGGCGCTGTTCTTCCACCGCTACCTGCAGCGCCGCGTCGATGAGCTGGTGGTCGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTCGTGCAAGGAGACCGTGACGTCGACCTGAGCGAGGCCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90

100

0.9