Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCL43_RS01775 Genome accession   NZ_CP073275
Coordinates   352761..353249 (+) Length   162 a.a.
NCBI ID   WP_111689845.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain IN-6992     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 347761..358249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCL43_RS01750 (KCL43_01750) - 348151..349137 (-) 987 WP_212573369.1 LPXTG cell wall anchor domain-containing protein -
  KCL43_RS01755 (KCL43_01755) - 349356..349640 (-) 285 WP_021320372.1 hypothetical protein -
  KCL43_RS01760 (KCL43_01760) mutY 349929..351077 (-) 1149 WP_012679029.1 A/G-specific adenine glycosylase -
  KCL43_RS01765 (KCL43_01765) - 351166..351391 (+) 226 Protein_316 HicB family protein -
  KCL43_RS01770 (KCL43_01770) rpsF 352452..352742 (+) 291 WP_012514997.1 30S ribosomal protein S6 -
  KCL43_RS01775 (KCL43_01775) ssb 352761..353249 (+) 489 WP_111689845.1 single-stranded DNA-binding protein Machinery gene
  KCL43_RS01780 (KCL43_01780) rpsR 353409..353648 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  KCL43_RS01785 (KCL43_01785) - 353913..354563 (-) 651 WP_111692189.1 DUF1129 domain-containing protein -
  KCL43_RS01790 (KCL43_01790) - 354815..355759 (-) 945 WP_014622324.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17795.63 Da        Isoelectric Point: 4.9008

>NTDB_id=558763 KCL43_RS01775 WP_111689845.1 352761..353249(+) (ssb) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPTANSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=558763 KCL43_RS01775 WP_111689845.1 352761..353249(+) (ssb) [Streptococcus equi subsp. zooepidemicus strain IN-6992]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTTAATGGCTCACCGACAGCCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGTAGAGATGAAAGTCCATTTGGCGGCTCAAACCCAATGGACATTTCAGATGACGATCTT
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.136

0.377