Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   KC397_RS04960 Genome accession   NZ_CP073273
Coordinates   1072139..1074376 (+) Length   745 a.a.
NCBI ID   WP_212571451.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067139..1079376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS04935 (KC397_04935) - 1067590..1068159 (-) 570 WP_020327793.1 hypothetical protein -
  KC397_RS04940 (KC397_04940) lolC 1068335..1069543 (+) 1209 WP_212571447.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  KC397_RS04945 (KC397_04945) lolD 1069536..1070222 (+) 687 WP_020327790.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KC397_RS04950 (KC397_04950) lolE 1070223..1071467 (+) 1245 WP_212571449.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  KC397_RS04955 (KC397_04955) - 1071600..1072130 (-) 531 WP_020327788.1 DUF2062 domain-containing protein -
  KC397_RS04960 (KC397_04960) comEC 1072139..1074376 (+) 2238 WP_212571451.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KC397_RS04965 (KC397_04965) msbA 1074409..1076157 (+) 1749 WP_212571453.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  KC397_RS04970 (KC397_04970) lpxK 1076161..1077168 (+) 1008 WP_212571455.1 tetraacyldisaccharide 4'-kinase -
  KC397_RS04975 (KC397_04975) - 1077149..1077328 (+) 180 WP_020327784.1 Trm112 family protein -
  KC397_RS04980 (KC397_04980) kdsB 1077328..1078071 (+) 744 WP_154184588.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83428.69 Da        Isoelectric Point: 8.5313

>NTDB_id=558719 KC397_RS04960 WP_212571451.1 1072139..1074376(+) (comEC) [Vibrio fluvialis strain 19-VB00936]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQELHTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNFRSMLHRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGSAMMRLHVSLLWMPFVSGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGVRVTAVQRILITLAVVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTRHGWRKWLTVQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTTFVGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTATVVFSVGLLLWICRPVLSWRAQLYAGIALLGF
GFFTPHDERWRVDILDVGHGLAVLIERNHNALLYDTGSGWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSGPNWQACHAGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQAMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYVDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=558719 KC397_RS04960 WP_212571451.1 1072139..1074376(+) (comEC) [Vibrio fluvialis strain 19-VB00936]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAAGAATTGCACACTTTTTGGCAGCCGAAGGTACGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAGGGTTGGGTTGCTAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTTCGCAGTAT
GTTGCACCGCCAAATCAAAACATGGACGCAAAACAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAATAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAAGTGCGATGATGCGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGT
TTCCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCGTGCGTGTTACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGTGGTGTTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACACGTCATGGCTGGCGAAAATGGCTGACGGTGCAATGCTCGTTAGTCACTATGATGATTCCAGTTTCCG
CGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTG
CCGCTGCTGTTTCTCGCACTGTTTCTCACTACCTTTGTCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCTGTAAGTCAGACGGCGACGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGATTTGCCGCCCGGTATTAAGCTGGCGAGCTCAACTCTATGCGGGAATTGCATTACTTGGCTTT
GGCTTTTTTACCCCACACGATGAGCGTTGGCGAGTTGACATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACTGGCAGTGGCTGGCCTGAAGGCAGTTACGTTCGCTCTTTGATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGCCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACGCGGGAGAACA
GTGGGAATGGCAAGGACTGACGATGACGGCACTATGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAAGCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCGAGCGGGTTTCCCCGCAAGTGGCTATTGCGTCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATGTGGATGCGGGGTCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATTACTCTGACTTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Competence protein (Competence)

(208-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.467

100

0.538
  comEC Vibrio parahaemolyticus RIMD 2210633

42.364

100

0.428
  comEC Vibrio campbellii strain DS40M4

41.402

100

0.42