Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KCX77_RS17890 Genome accession   NZ_CP073265
Coordinates   3575163..3575852 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain CNY01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3570163..3580852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS17855 (KCX77_17855) - 3570342..3570824 (-) 483 WP_088118069.1 flagellar protein FlgN -
  KCX77_RS17860 (KCX77_17860) flgM 3570840..3571100 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  KCX77_RS17865 (KCX77_17865) - 3571180..3571599 (-) 420 WP_212063892.1 TIGR03826 family flagellar region protein -
  KCX77_RS17870 (KCX77_17870) comFC 3571671..3572360 (-) 690 WP_283246635.1 double zinc ribbon domain-containing protein Machinery gene
  KCX77_RS17875 (KCX77_17875) - 3572357..3572653 (-) 297 WP_106033805.1 late competence development ComFB family protein -
  KCX77_RS17880 (KCX77_17880) comFA 3572710..3574107 (-) 1398 WP_212063894.1 ATP-dependent helicase ComFA Machinery gene
  KCX77_RS17885 (KCX77_17885) - 3574214..3575056 (-) 843 WP_003326716.1 DegV family protein -
  KCX77_RS17890 (KCX77_17890) degU 3575163..3575852 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KCX77_RS17895 (KCX77_17895) degS 3575929..3577092 (-) 1164 WP_212063895.1 sensor histidine kinase Regulator
  KCX77_RS17900 (KCX77_17900) - 3577310..3577963 (+) 654 WP_003326713.1 YigZ family protein -
  KCX77_RS17905 (KCX77_17905) - 3577963..3579219 (+) 1257 WP_063638077.1 LCP family protein -
  KCX77_RS17910 (KCX77_17910) - 3579310..3580386 (-) 1077 WP_063638078.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=558664 KCX77_RS17890 WP_003219701.1 3575163..3575852(-) (degU) [Bacillus atrophaeus strain CNY01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=558664 KCX77_RS17890 WP_003219701.1 3575163..3575852(-) (degU) [Bacillus atrophaeus strain CNY01]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCCGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATTTGCTGAAAGA
AATGGACGCTGATACTTTGATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTCTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1