Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KCX77_RS17880 Genome accession   NZ_CP073265
Coordinates   3572710..3574107 (-) Length   465 a.a.
NCBI ID   WP_212063894.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3567710..3579107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS17845 (KCX77_17845) flgL 3567894..3568790 (-) 897 WP_088118067.1 flagellar hook-associated protein FlgL -
  KCX77_RS17850 (KCX77_17850) flgK 3568802..3570325 (-) 1524 WP_212063891.1 flagellar hook-associated protein FlgK -
  KCX77_RS17855 (KCX77_17855) - 3570342..3570824 (-) 483 WP_088118069.1 flagellar protein FlgN -
  KCX77_RS17860 (KCX77_17860) flgM 3570840..3571100 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  KCX77_RS17865 (KCX77_17865) - 3571180..3571599 (-) 420 WP_212063892.1 TIGR03826 family flagellar region protein -
  KCX77_RS17870 (KCX77_17870) comFC 3571671..3572360 (-) 690 WP_283246635.1 double zinc ribbon domain-containing protein Machinery gene
  KCX77_RS17875 (KCX77_17875) - 3572357..3572653 (-) 297 WP_106033805.1 late competence development ComFB family protein -
  KCX77_RS17880 (KCX77_17880) comFA 3572710..3574107 (-) 1398 WP_212063894.1 ATP-dependent helicase ComFA Machinery gene
  KCX77_RS17885 (KCX77_17885) - 3574214..3575056 (-) 843 WP_003326716.1 DegV family protein -
  KCX77_RS17890 (KCX77_17890) degU 3575163..3575852 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KCX77_RS17895 (KCX77_17895) degS 3575929..3577092 (-) 1164 WP_212063895.1 sensor histidine kinase Regulator
  KCX77_RS17900 (KCX77_17900) - 3577310..3577963 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53036.62 Da        Isoelectric Point: 10.1151

>NTDB_id=558663 KCX77_RS17880 WP_212063894.1 3572710..3574107(-) (comFA) [Bacillus atrophaeus strain CNY01]
MQTDLKKKPLFSADLQQFLHQRHLLRTEIPFSEEIINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKISALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIVIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLNSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVEQHVKVGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTVPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKHAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=558663 KCX77_RS17880 WP_212063894.1 3572710..3574107(-) (comFA) [Bacillus atrophaeus strain CNY01]
ATGCAGACTGATTTGAAAAAGAAACCTTTGTTCTCTGCTGATCTGCAGCAGTTCCTTCATCAGCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAAATTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCGGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGTGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGATCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCGTCATAGACGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAACTCGGTTCGCATACCCGCAAGACATCACCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGTAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGTAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTGTTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGGAGGACAGGGCGGCATAAAAA
ACATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-425)

Type III restriction enzyme, res subunit (ResIII)

(123-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.129

100

0.761