Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KCX77_RS02130 Genome accession   NZ_CP073265
Coordinates   439395..440543 (+) Length   382 a.a.
NCBI ID   WP_004430265.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CNY01     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 434395..445543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX77_RS02105 (KCX77_02105) - 434675..435424 (+) 750 WP_010789712.1 amino acid ABC transporter ATP-binding protein -
  KCX77_RS02110 (KCX77_02110) - 435440..436591 (+) 1152 WP_212064168.1 M20 peptidase aminoacylase family protein -
  KCX77_RS02115 (KCX77_02115) - 436588..437931 (+) 1344 WP_212064169.1 MmgE/PrpD family protein -
  KCX77_RS02120 (KCX77_02120) - 438037..438717 (-) 681 WP_212064170.1 ABC transporter ATP-binding protein -
  KCX77_RS02125 (KCX77_02125) - 438735..439112 (-) 378 Protein_388 ABC transporter permease -
  KCX77_RS20840 - 439109..439201 (+) 93 Protein_389 hypothetical protein -
  KCX77_RS02130 (KCX77_02130) rapC 439395..440543 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  KCX77_RS02135 (KCX77_02135) phrC 440527..440646 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KCX77_RS02140 (KCX77_02140) - 440780..440887 (-) 108 WP_106273028.1 YjcZ family sporulation protein -
  KCX77_RS02145 (KCX77_02145) - 441091..441198 (-) 108 WP_035192051.1 YjcZ family sporulation protein -
  KCX77_RS02150 (KCX77_02150) - 441305..442669 (-) 1365 WP_004430267.1 aspartate kinase -
  KCX77_RS02155 (KCX77_02155) ceuB 443102..444052 (+) 951 WP_212064171.1 ABC transporter permease Machinery gene
  KCX77_RS02160 (KCX77_02160) - 444045..444992 (+) 948 WP_010789704.1 iron chelate uptake ABC transporter family permease subunit -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45756.03 Da        Isoelectric Point: 4.8173

>NTDB_id=558603 KCX77_RS02130 WP_004430265.1 439395..440543(+) (rapC) [Bacillus atrophaeus strain CNY01]
MKSEVIPSSAVGQKINEWYKYIRTFSVPDAEILKAEIEREIEHMEDDPNLLLYFSLMEFRHQLMLDYLEPLEKLKIEDQP
SLSELLRNIDSNQADLKGLLDYYVNFFRGMHEFDKREFISAITYYKQAEKRLSFVADHIERAEFYFKVAEAYYYMKQTYF
SLIHIKNAYEIYAEQETYNVRIIQCHFVFGVNLMDERRFEQAARHFELALHMAESENKAQLVGRALYNIGLCYYNQDLLE
PAIDYFERAVSIFESNAIIKSLPQAYFLITQIYYKCKNNSKAVEYHSRGYEYAKETDDIDYMVKFEFLKTLYQAQPDEQG
IEKCFYYLKNKNMYADIEDLALVVAKYYYEQKNFEMSSSYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=558603 KCX77_RS02130 WP_004430265.1 439395..440543(+) (rapC) [Bacillus atrophaeus strain CNY01]
ATGAAGAGCGAGGTGATTCCTTCTTCAGCAGTCGGTCAAAAAATTAACGAGTGGTATAAGTATATTCGTACGTTCAGTGT
ACCGGACGCCGAAATTCTAAAAGCCGAGATTGAACGGGAAATTGAACATATGGAAGACGATCCGAACTTGCTGCTATATT
TCTCATTAATGGAATTCCGCCACCAGCTGATGCTTGATTATCTTGAGCCGTTAGAAAAATTAAAAATAGAGGACCAGCCG
AGCTTGTCAGAATTACTGCGCAACATTGACAGCAATCAGGCTGATTTAAAAGGGCTGCTTGATTATTATGTAAACTTTTT
TCGGGGGATGCACGAATTTGATAAGAGAGAATTCATTTCAGCCATCACCTATTACAAACAGGCTGAAAAAAGACTTTCCT
TTGTAGCTGATCATATTGAAAGAGCCGAGTTCTATTTTAAAGTGGCCGAAGCTTATTACTATATGAAACAGACGTATTTC
TCACTGATCCATATCAAAAATGCCTACGAAATATATGCTGAGCAAGAAACATATAATGTGAGAATTATCCAGTGTCATTT
TGTTTTCGGAGTAAATTTGATGGATGAAAGGCGTTTCGAACAAGCCGCGCGCCATTTTGAACTCGCATTACATATGGCGG
AATCAGAAAATAAAGCACAATTGGTCGGAAGAGCGCTTTATAATATTGGGTTGTGTTATTACAACCAAGATCTTCTTGAG
CCTGCCATTGACTATTTTGAAAGAGCGGTTTCTATATTCGAAAGCAACGCCATCATTAAATCCCTTCCTCAGGCATATTT
TCTGATCACGCAGATTTATTATAAATGTAAAAATAATTCTAAAGCAGTGGAATATCACAGCAGGGGTTATGAATATGCTA
AAGAAACAGATGATATTGACTACATGGTGAAATTTGAATTTTTAAAAACTCTATATCAAGCCCAGCCGGATGAACAAGGA
ATCGAAAAATGCTTTTATTACCTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGCACTAGTAGTAGCTAAATA
TTACTATGAACAAAAAAACTTCGAAATGTCATCTTCCTACTTTCTCAAAGTAGAAGAGGCCAGAAAACAAATACAAAGGA
GTGAAGGTTTATATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_1)

(224-256)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

85.079

100

0.851
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571