Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KCV10_RS06105 Genome accession   NZ_CP073243
Coordinates   1326215..1327783 (+) Length   522 a.a.
NCBI ID   WP_212512007.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321215..1332783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS06085 - 1321707..1323008 (+) 1302 WP_025465069.1 homoserine dehydrogenase -
  KCV10_RS06090 thrC 1323063..1324202 (+) 1140 WP_019457006.1 threonine synthase -
  KCV10_RS06095 pbpG 1324311..1325357 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  KCV10_RS06100 - 1325569..1326204 (+) 636 WP_019457005.1 response regulator -
  KCV10_RS06105 pilS 1326215..1327783 (+) 1569 WP_212512007.1 sensor histidine kinase Regulator
  KCV10_RS06110 pilR 1327807..1329228 (+) 1422 WP_212512008.1 sigma-54-dependent transcriptional regulator Regulator
  KCV10_RS06115 - 1329232..1330416 (-) 1185 WP_212512009.1 S41 family peptidase -
  KCV10_RS06120 gpmI 1330432..1331979 (-) 1548 WP_004699264.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59075.26 Da        Isoelectric Point: 6.3383

>NTDB_id=558441 KCV10_RS06105 WP_212512007.1 1326215..1327783(+) (pilS) [Acinetobacter seifertii strain S63-3]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQTDNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIAAQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGDLQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMISKQAKRIDSIVQDTLGLARSERTHPTQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPDVMINIHSQANKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=558441 KCV10_RS06105 WP_212512007.1 1326215..1327783(+) (pilS) [Acinetobacter seifertii strain S63-3]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAACTGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ACACCCTACTAGGCTACTCAATTGTCAGCCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAGCTCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTCTACTGACTTTTTCTGTTGGTGAACCAAATTTACAACTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTGCTCAGCGCAAGAATGTCTTTGATCATTACATTACTTGCGA
TCATTGCAGTTATTTACCAACGCTTCGTGGGTAGTTTGTTCGACTACAACAATCTAAACACGATCGGGAATAGTGCCCTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGTATTGGTCAAATTGCGGTACAGCGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAGTCGGTGGAGCTTTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACAATATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGTATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACACTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAATCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGACATATGATTAGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTACTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCAGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATCAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTGATGTCATGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

91.954

100

0.92