Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KCV10_RS04440 Genome accession   NZ_CP073243
Coordinates   970927..971337 (-) Length   136 a.a.
NCBI ID   WP_039251138.1    Uniprot ID   A0A7H2V962
Organism   Acinetobacter seifertii strain S63-3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 965927..976337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS04410 - 966014..966283 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  KCV10_RS04415 rapZ 966280..967131 (-) 852 WP_019458134.1 RNase adapter RapZ -
  KCV10_RS04420 panC 967154..968002 (-) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  KCV10_RS04425 panB 968006..968815 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  KCV10_RS04430 folK 968859..969341 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  KCV10_RS04435 pcnB 969338..970801 (-) 1464 WP_151760826.1 polynucleotide adenylyltransferase PcnB -
  KCV10_RS04440 comEA 970927..971337 (-) 411 WP_039251138.1 ComEA family DNA-binding protein Machinery gene
  KCV10_RS04445 mazG 971306..972112 (-) 807 WP_151760827.1 nucleoside triphosphate pyrophosphohydrolase -
  KCV10_RS04450 - 972224..972997 (+) 774 WP_212511917.1 SDR family oxidoreductase -
  KCV10_RS04455 - 973042..975348 (-) 2307 WP_004698623.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15575.84 Da        Isoelectric Point: 10.3101

>NTDB_id=558431 KCV10_RS04440 WP_039251138.1 970927..971337(-) (comEA) [Acinetobacter seifertii strain S63-3]
MRYSMRIWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=558431 KCV10_RS04440 WP_039251138.1 970927..971337(-) (comEA) [Acinetobacter seifertii strain S63-3]
ATGCGATACAGCATGAGAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGTGTGATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGACTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGACGAAATTAAAAATGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2V962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.235

100

0.882
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397