Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KCV09_RS14560 Genome accession   NZ_CP073241
Coordinates   3154408..3154794 (+) Length   128 a.a.
NCBI ID   WP_212515307.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3149408..3159794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS14545 - 3150378..3152684 (+) 2307 WP_004940517.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KCV09_RS14550 - 3152740..3153516 (-) 777 WP_004940515.1 SDR family oxidoreductase -
  KCV09_RS14555 mazG 3153638..3154411 (+) 774 WP_004945376.1 nucleoside triphosphate pyrophosphohydrolase -
  KCV09_RS14560 comEA 3154408..3154794 (+) 387 WP_212515307.1 ComEA family DNA-binding protein Machinery gene
  KCV09_RS14565 pcnB 3154920..3156386 (+) 1467 WP_004940506.1 polynucleotide adenylyltransferase PcnB -
  KCV09_RS14570 folK 3156383..3156868 (+) 486 WP_212515308.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  KCV09_RS14575 panB 3156908..3157717 (+) 810 WP_151814879.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  KCV09_RS14580 panC 3157721..3158566 (+) 846 WP_004940498.1 pantoate--beta-alanine ligase -
  KCV09_RS14585 rapZ 3158588..3159439 (+) 852 WP_004940495.1 RNase adapter RapZ -
  KCV09_RS14590 - 3159436..3159705 (+) 270 WP_025096094.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14509.56 Da        Isoelectric Point: 10.2866

>NTDB_id=558423 KCV09_RS14560 WP_212515307.1 3154408..3154794(+) (comEA) [Acinetobacter soli strain M3-1-68]
MMIRIFYSALCALLTSLLFSSSLYAQAFDQQYQAWKSQQQAHDARLQSSHSNHYLAKPSLQANTGPKVNINTATAKDLQQ
LHGVGEKKALSIVEYRQQYGRFNSVDDLQKVKGIGPKFIEKNRHRLAI

Nucleotide


Download         Length: 387 bp        

>NTDB_id=558423 KCV09_RS14560 WP_212515307.1 3154408..3154794(+) (comEA) [Acinetobacter soli strain M3-1-68]
ATGATGATTCGAATTTTTTATAGCGCCTTGTGCGCGCTACTGACCAGTTTACTATTCAGTTCAAGTTTGTATGCTCAGGC
GTTTGACCAGCAATACCAAGCGTGGAAAAGCCAGCAACAGGCACACGACGCACGACTACAGTCATCTCACTCCAATCATT
ATTTAGCCAAACCTTCCTTGCAGGCAAACACAGGCCCTAAAGTGAATATCAATACTGCGACAGCCAAAGACTTGCAGCAG
TTACATGGGGTAGGAGAGAAAAAGGCACTCTCAATTGTAGAGTATCGTCAGCAATACGGACGCTTTAACTCAGTAGATGA
TTTACAGAAAGTGAAAGGTATTGGGCCTAAATTCATTGAAAAAAATCGTCATCGCTTGGCCATTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(66-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

70.312

100

0.703
  comEA Acinetobacter baumannii strain A118

45.968

96.875

0.445
  comEA Acinetobacter baumannii D1279779

42.063

98.438

0.414