Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GHH_RS12370 | Genome accession | NC_020210 |
| Coordinates | 2510944..2512017 (-) | Length | 357 a.a. |
| NCBI ID | WP_015375397.1 | Uniprot ID | L7ZU71 |
| Organism | Geobacillus sp. GHH01 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2505944..2517017
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHH_RS12330 (GHH_c25040) | - | 2506694..2507488 (+) | 795 | WP_011231909.1 | YqhG family protein | - |
| GHH_RS12335 (GHH_c25050) | - | 2507591..2507770 (-) | 180 | WP_011231910.1 | YqzE family protein | - |
| GHH_RS12340 (GHH_c25060) | comGG | 2507816..2508205 (-) | 390 | WP_012820555.1 | competence type IV pilus minor pilin ComGG | - |
| GHH_RS12345 (GHH_c25070) | comGF | 2508281..2508727 (-) | 447 | WP_012820554.1 | competence type IV pilus minor pilin ComGF | - |
| GHH_RS12350 (GHH_c25080) | - | 2508706..2509032 (-) | 327 | WP_015375393.1 | type II secretion system protein | - |
| GHH_RS12355 (GHH_c25090) | comGD | 2509016..2509453 (-) | 438 | WP_015375394.1 | competence type IV pilus minor pilin ComGD | - |
| GHH_RS12360 (GHH_c25100) | comGC | 2509443..2509739 (-) | 297 | WP_015375395.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GHH_RS12365 (GHH_c25110) | comGB | 2509919..2510947 (-) | 1029 | WP_015375396.1 | competence type IV pilus assembly protein ComGB | - |
| GHH_RS12370 (GHH_c25120) | comGA | 2510944..2512017 (-) | 1074 | WP_015375397.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GHH_RS12375 (GHH_c25130) | - | 2512210..2512908 (+) | 699 | WP_015375398.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GHH_RS12380 (GHH_c25140) | - | 2513064..2513306 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GHH_RS12385 (GHH_c25150) | - | 2513390..2514523 (-) | 1134 | WP_015375399.1 | class I SAM-dependent methyltransferase | - |
| GHH_RS12390 (GHH_c25160) | - | 2514843..2515475 (-) | 633 | WP_012820544.1 | MBL fold metallo-hydrolase | - |
| GHH_RS18405 (GHH_c25170) | - | 2515644..2515820 (+) | 177 | WP_011231921.1 | DUF2759 domain-containing protein | - |
| GHH_RS12400 (GHH_c25180) | - | 2515856..2517016 (-) | 1161 | WP_015375400.1 | M14 family metallocarboxypeptidase | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 39640.10 Da Isoelectric Point: 8.1836
>NTDB_id=55838 GHH_RS12370 WP_015375397.1 2510944..2512017(-) (comGA) [Geobacillus sp. GHH01]
MLNEIEQTANRLLAEAVQRRASDLHLVPRRRDAAVRLRLDGMLVDVGALPKETAERLIVHFKFLAGMDIGERRRPQSGAM
EVAEFGETVYLRLSTLPTLYDESLVIRLLPQRLSLPLRELSLFFHSTARLFSFMQHPQGLVLLTGPTGSGKTTTLYTLLD
LCQAERQRNIITLEDPIEKQNERLLQVQINEKAGITYAAGLKAALRHDPDVLMVGEIRDHDTAAIAIRSALSGHLVVSTM
HAADAVGAVYRLHEFGIPLGDLAETLLAVSAQRLVELCCPLCGDDCHPSCGRLGRRRRTAVYELLCGSALEDVIHFLSNG
RGKPKRSYMTLARLIRKGIALGYLPVRMLELVGGEER
MLNEIEQTANRLLAEAVQRRASDLHLVPRRRDAAVRLRLDGMLVDVGALPKETAERLIVHFKFLAGMDIGERRRPQSGAM
EVAEFGETVYLRLSTLPTLYDESLVIRLLPQRLSLPLRELSLFFHSTARLFSFMQHPQGLVLLTGPTGSGKTTTLYTLLD
LCQAERQRNIITLEDPIEKQNERLLQVQINEKAGITYAAGLKAALRHDPDVLMVGEIRDHDTAAIAIRSALSGHLVVSTM
HAADAVGAVYRLHEFGIPLGDLAETLLAVSAQRLVELCCPLCGDDCHPSCGRLGRRRRTAVYELLCGSALEDVIHFLSNG
RGKPKRSYMTLARLIRKGIALGYLPVRMLELVGGEER
Nucleotide
Download Length: 1074 bp
>NTDB_id=55838 GHH_RS12370 WP_015375397.1 2510944..2512017(-) (comGA) [Geobacillus sp. GHH01]
GTGCTGAACGAGATCGAACAAACGGCAAACCGCCTCCTCGCTGAAGCGGTGCAGCGCCGCGCCTCGGATCTCCACCTCGT
TCCGCGCCGCCGTGATGCCGCCGTTCGTCTTCGGCTCGATGGCATGCTTGTCGACGTTGGCGCTCTTCCGAAAGAAACGG
CGGAACGCCTCATCGTTCACTTTAAATTTTTAGCCGGCATGGACATCGGGGAACGACGCCGTCCGCAAAGCGGCGCCATG
GAAGTAGCGGAGTTTGGGGAAACGGTGTATTTGCGTTTATCGACATTGCCGACGCTCTACGATGAAAGCCTCGTCATTCG
ACTTCTGCCGCAGCGCCTCTCGCTGCCGCTTCGCGAACTATCCTTATTCTTCCACTCCACCGCACGATTATTTTCCTTTA
TGCAGCATCCGCAAGGGCTTGTGCTGTTGACCGGCCCGACGGGGTCGGGAAAAACGACGACCCTCTACACCCTTCTTGAT
CTTTGCCAAGCGGAAAGGCAACGCAACATCATCACGCTTGAAGATCCGATCGAAAAACAGAACGAACGATTGTTGCAAGT
GCAAATCAATGAAAAAGCAGGCATCACATACGCCGCCGGGTTAAAAGCGGCGCTGCGCCATGACCCGGATGTGTTGATGG
TCGGCGAGATCCGCGATCATGATACGGCGGCCATTGCCATCCGTTCAGCGTTGAGCGGCCATTTGGTCGTCTCGACGATG
CACGCCGCCGATGCAGTCGGCGCCGTCTACCGGCTGCATGAATTCGGCATTCCGCTCGGCGATTTGGCTGAGACGCTGCT
TGCCGTCTCTGCCCAGCGGCTTGTCGAGCTTTGCTGCCCGTTGTGCGGCGACGATTGCCATCCATCGTGCGGCCGTCTTG
GGCGCCGCCGGCGCACGGCTGTTTATGAGTTGCTTTGCGGTTCAGCCCTGGAGGACGTGATTCATTTTCTCTCCAATGGG
AGAGGGAAGCCCAAGCGCTCTTATATGACGCTCGCTCGCTTGATCCGCAAGGGGATTGCGCTCGGCTACCTGCCCGTCCG
CATGCTTGAGCTCGTCGGAGGGGAAGAAAGATGA
GTGCTGAACGAGATCGAACAAACGGCAAACCGCCTCCTCGCTGAAGCGGTGCAGCGCCGCGCCTCGGATCTCCACCTCGT
TCCGCGCCGCCGTGATGCCGCCGTTCGTCTTCGGCTCGATGGCATGCTTGTCGACGTTGGCGCTCTTCCGAAAGAAACGG
CGGAACGCCTCATCGTTCACTTTAAATTTTTAGCCGGCATGGACATCGGGGAACGACGCCGTCCGCAAAGCGGCGCCATG
GAAGTAGCGGAGTTTGGGGAAACGGTGTATTTGCGTTTATCGACATTGCCGACGCTCTACGATGAAAGCCTCGTCATTCG
ACTTCTGCCGCAGCGCCTCTCGCTGCCGCTTCGCGAACTATCCTTATTCTTCCACTCCACCGCACGATTATTTTCCTTTA
TGCAGCATCCGCAAGGGCTTGTGCTGTTGACCGGCCCGACGGGGTCGGGAAAAACGACGACCCTCTACACCCTTCTTGAT
CTTTGCCAAGCGGAAAGGCAACGCAACATCATCACGCTTGAAGATCCGATCGAAAAACAGAACGAACGATTGTTGCAAGT
GCAAATCAATGAAAAAGCAGGCATCACATACGCCGCCGGGTTAAAAGCGGCGCTGCGCCATGACCCGGATGTGTTGATGG
TCGGCGAGATCCGCGATCATGATACGGCGGCCATTGCCATCCGTTCAGCGTTGAGCGGCCATTTGGTCGTCTCGACGATG
CACGCCGCCGATGCAGTCGGCGCCGTCTACCGGCTGCATGAATTCGGCATTCCGCTCGGCGATTTGGCTGAGACGCTGCT
TGCCGTCTCTGCCCAGCGGCTTGTCGAGCTTTGCTGCCCGTTGTGCGGCGACGATTGCCATCCATCGTGCGGCCGTCTTG
GGCGCCGCCGGCGCACGGCTGTTTATGAGTTGCTTTGCGGTTCAGCCCTGGAGGACGTGATTCATTTTCTCTCCAATGGG
AGAGGGAAGCCCAAGCGCTCTTATATGACGCTCGCTCGCTTGATCCGCAAGGGGATTGCGCTCGGCTACCTGCCCGTCCG
CATGCTTGAGCTCGTCGGAGGGGAAGAAAGATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
50.581 |
96.359 |
0.487 |