Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | GHH_RS12360 | Genome accession | NC_020210 |
| Coordinates | 2509443..2509739 (-) | Length | 98 a.a. |
| NCBI ID | WP_015375395.1 | Uniprot ID | L8A1X1 |
| Organism | Geobacillus sp. GHH01 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2504443..2514739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHH_RS12325 (GHH_c25030) | - | 2505043..2506707 (+) | 1665 | WP_015375392.1 | DEAD/DEAH box helicase | - |
| GHH_RS12330 (GHH_c25040) | - | 2506694..2507488 (+) | 795 | WP_011231909.1 | YqhG family protein | - |
| GHH_RS12335 (GHH_c25050) | - | 2507591..2507770 (-) | 180 | WP_011231910.1 | YqzE family protein | - |
| GHH_RS12340 (GHH_c25060) | comGG | 2507816..2508205 (-) | 390 | WP_012820555.1 | competence type IV pilus minor pilin ComGG | - |
| GHH_RS12345 (GHH_c25070) | comGF | 2508281..2508727 (-) | 447 | WP_012820554.1 | competence type IV pilus minor pilin ComGF | - |
| GHH_RS12350 (GHH_c25080) | - | 2508706..2509032 (-) | 327 | WP_015375393.1 | type II secretion system protein | - |
| GHH_RS12355 (GHH_c25090) | comGD | 2509016..2509453 (-) | 438 | WP_015375394.1 | competence type IV pilus minor pilin ComGD | - |
| GHH_RS12360 (GHH_c25100) | comGC | 2509443..2509739 (-) | 297 | WP_015375395.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GHH_RS12365 (GHH_c25110) | comGB | 2509919..2510947 (-) | 1029 | WP_015375396.1 | competence type IV pilus assembly protein ComGB | - |
| GHH_RS12370 (GHH_c25120) | comGA | 2510944..2512017 (-) | 1074 | WP_015375397.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GHH_RS12375 (GHH_c25130) | - | 2512210..2512908 (+) | 699 | WP_015375398.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GHH_RS12380 (GHH_c25140) | - | 2513064..2513306 (+) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GHH_RS12385 (GHH_c25150) | - | 2513390..2514523 (-) | 1134 | WP_015375399.1 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10761.58 Da Isoelectric Point: 7.2422
>NTDB_id=55837 GHH_RS12360 WP_015375395.1 2509443..2509739(-) (comGC) [Geobacillus sp. GHH01]
MNQKGFTLIEMLIVMMVISVLLLIAIPNITKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISTNGDVSESGS
MNQKGFTLIEMLIVMMVISVLLLIAIPNITKHNSMINSKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLAGRYIKSDKCP
NGHAIQISTNGDVSESGS
Nucleotide
Download Length: 297 bp
>NTDB_id=55837 GHH_RS12360 WP_015375395.1 2509443..2509739(-) (comGC) [Geobacillus sp. GHH01]
ATGAATCAAAAAGGATTTACATTGATCGAAATGCTGATCGTGATGATGGTGATTTCTGTTCTGCTTCTGATTGCCATTCC
GAATATAACCAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCGATCCAAATCAGCACGAACGGCGATGTGAGTGAAAGTGGCTCGTAA
ATGAATCAAAAAGGATTTACATTGATCGAAATGCTGATCGTGATGATGGTGATTTCTGTTCTGCTTCTGATTGCCATTCC
GAATATAACCAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACCGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAGCATAACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCG
AACGGTCATGCGATCCAAATCAGCACGAACGGCGATGTGAGTGAAAGTGGCTCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
53.125 |
97.959 |
0.52 |
| comGC | Staphylococcus aureus MW2 |
43.011 |
94.898 |
0.408 |
| comGC | Staphylococcus aureus N315 |
43.011 |
94.898 |
0.408 |