Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KCG55_RS02535 Genome accession   NZ_CP073117
Coordinates   521573..522196 (-) Length   207 a.a.
NCBI ID   WP_107867828.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516573..527196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS02515 (KCG55_02520) - 516961..517968 (+) 1008 WP_254323299.1 IS5 family transposase -
  KCG55_RS02520 (KCG55_02525) pilQ 518191..520323 (-) 2133 WP_254323300.1 type IV pilus secretin PilQ Machinery gene
  KCG55_RS02525 (KCG55_02530) pilP 520344..520886 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  KCG55_RS02530 (KCG55_02535) pilO 520902..521573 (-) 672 WP_254323301.1 type 4a pilus biogenesis protein PilO -
  KCG55_RS02535 (KCG55_02540) pilN 521573..522196 (-) 624 WP_107867828.1 PilN domain-containing protein Machinery gene
  KCG55_RS02540 (KCG55_02545) pilM 522201..523292 (-) 1092 WP_070825873.1 type IV pilus assembly protein PilM -
  KCG55_RS02545 (KCG55_02550) - 523446..525833 (+) 2388 WP_254323302.1 penicillin-binding protein 1A -
  KCG55_RS02550 (KCG55_02555) - 525894..526730 (+) 837 WP_254323303.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23044.27 Da        Isoelectric Point: 4.7171

>NTDB_id=558108 KCG55_RS02535 WP_107867828.1 521573..522196(-) (pilN) [Neisseria subflava strain HP0015]
MIELTRINLLPYREEIKQRKQQQFKILMLGAFAVGLGLAAATYLGIDSAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNALTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=558108 KCG55_RS02535 WP_107867828.1 521573..522196(-) (pilN) [Neisseria subflava strain HP0015]
ATGATCGAATTAACCAGAATCAACCTTCTTCCGTATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAATATT
GATGCTTGGTGCTTTTGCAGTGGGTTTGGGCTTGGCGGCCGCTACTTATCTCGGTATTGATAGCGCCATTAGCAATCAAG
AAGGCCGCAACAACTTCCTGCAAACCGAAATCGACAGACTTGATAGAGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTAGCTAAAAAGCTGAAAGTTGAAGAGTTGCAGGAAAAACGCTATCAAGCGGCTTATATCCTTGATTC
TTTGAATGCGCTTACGCCCGATAATACTTATTTGACTGCGTTGGAAGCAGAAAGCCCGACCAGCTATAAAATCAGCGGCC
ATGCCATCAGCGACAATAAAATCGCCGTTATGATGCGCTCCCTGCCAAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTAAATACGCCGGCTCCTGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCAGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.345

95.169

0.536