Detailed information NTG0558106

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: KCG55_RS02520
• Genome accession: NZ_CP073117
• Coordinates: 518191..520323 (-)
• Length: 710 a.a.
• NCBI ID: WP_254323300.1
• Uniprot ID: -
• Organism: Neisseria subflava strain HP0015
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	516961..517968	518191..520323	flank	223

Gene organization within MGE regions

Location: 516961..520323

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCG55_RS02515 (KCG55_02520)	-	516961..517968 (+)	1008	WP_254323299.1	IS5 family transposase	-
KCG55_RS02520 (KCG55_02525)	pilQ	518191..520323 (-)	2133	WP_254323300.1	type IV pilus secretin PilQ	Machinery gene

Sequence

Protein

• Length: 710 a.a.
• Molecular weight: 78079.23 Da
• Isoelectric Point: 9.6985

>NTDB_id=558106 KCG55_RS02520 WP_254323300.1 518191..520323(-) (pilQ) [Neisseria subflava strain HP0015]
MKTKHMTKLFAGFSVALAIQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAIVANERAATPSTARSAQTYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNQNANKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide

• Length: 2133 bp

>NTDB_id=558106 KCG55_RS02520 WP_254323300.1 518191..520323(-) (pilQ) [Neisseria subflava strain HP0015]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTATTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATTATCAAAATCCGTTTCGACAAAGACGTCACTACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATCGCATTGGATTTTGCCAACACCAATATCCGTTTGCCTCAGCCTGTTTTG
GAATATGCAGACCCATTGCTGAATCAAATTACTGCGGCACAAAACAATGACCGCGCACGCGTAGTTTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAAATTCGCGGCAACGAAGTTTGGGTATTTGTAAATGAATCTACTGATCAAACCAATGCGA
TCGTTGCAAATGAACGTGCGGCTACGCCGTCTACCGCGCGCTCTGCTCAGACTTATCAAGCCGTTTCAGCAGCCAATATC
GATTTTCGCAAAGGCGCACGCAATTCCGGCATTATTGAATTGTCCGCCCCTGGTTTCAGCGGACAGCCGGACATTAAACA
GCAGCGCGACCGCGTGGTTGTTACCTTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGATT
TCAATACCCCTGTACAAAACGTTACGCTCAAACGTATCGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCCTCTTCCGGCCGTTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCGGCGG
CTTGAACCAAAATGCAAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGCGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACCCTGTCTCTGAAA
GATGTACCTTGGGATCAGGCTTTAGACTTGGTTATGCAGGCGCGCAATTTGGATATGCGCCGTCAAGGCAACATCATTAA
TATTGCGCCTCGCGATGAATTGTTGGCAAAAGACAAAGCCTTCTTGCAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGCTGAAATACAAAAATGTGGAAGAGTTCCGCAAAATTCTGCGTTTGGAAGAATACGACAGC
AATAATTCCAACACCCGCAACACTCTGTTGAGCAACCGAGGCAGCGCCTTAATCGATCCTGCCACCAATACGCTGATCGT
GACCGACAACCGCGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGATGTTCCAACCCGTCAAGTAATGGTGG
AAGCGCGTATTGTGGAAGCAGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCAAGTGGCCGT
AACGCATGGGGTAGCAACTGGAGCAATGCGCAAACCAACTACAATACCAATGCCTCGTTTAACCGTGGCGACGTAGGCTA
CCGCACATGGACTTTGGATCCGAATGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGTGCATTGGGCTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCTAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCGACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAATACCAAGCACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGTACTAATGCAGTGAACAAAGT
CCCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGTGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATCATGGATAATGTGGGTAACAATCTGCGTTACTGA

Domains

Predicted by InterproScan.

• AMIN domain (AMIN) (38-115)

• Secretin and TonB N terminus short domain (STN) (303-350)

• Bacterial type II and III secretion system protein (Secretin) (545-702)

• Bacterial type II/III secretion system short domain (Secretin_N) (377-450)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Neisseria gonorrhoeae strain FA1090	64.189	100	0.669
pilQ	Neisseria meningitidis M1080	61.161	100	0.668
pilQ	Neisseria meningitidis MC58	68.705	78.31	0.538