Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KCG55_RS02520 Genome accession   NZ_CP073117
Coordinates   518191..520323 (-) Length   710 a.a.
NCBI ID   WP_254323300.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513191..525323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS02500 (KCG55_02505) - 513777..515090 (+) 1314 WP_254323297.1 ATP-binding protein -
  KCG55_RS02505 (KCG55_02510) aroB 515222..516301 (-) 1080 WP_107848890.1 3-dehydroquinate synthase -
  KCG55_RS02510 (KCG55_02515) - 516324..516836 (-) 513 WP_283255526.1 shikimate kinase -
  KCG55_RS02515 (KCG55_02520) - 516961..517968 (+) 1008 WP_254323299.1 IS5 family transposase -
  KCG55_RS02520 (KCG55_02525) pilQ 518191..520323 (-) 2133 WP_254323300.1 type IV pilus secretin PilQ Machinery gene
  KCG55_RS02525 (KCG55_02530) pilP 520344..520886 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  KCG55_RS02530 (KCG55_02535) pilO 520902..521573 (-) 672 WP_254323301.1 type 4a pilus biogenesis protein PilO -
  KCG55_RS02535 (KCG55_02540) pilN 521573..522196 (-) 624 WP_107867828.1 PilN domain-containing protein Machinery gene
  KCG55_RS02540 (KCG55_02545) pilM 522201..523292 (-) 1092 WP_070825873.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78079.23 Da        Isoelectric Point: 9.6985

>NTDB_id=558106 KCG55_RS02520 WP_254323300.1 518191..520323(-) (pilQ) [Neisseria subflava strain HP0015]
MKTKHMTKLFAGFSVALAIQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAIVANERAATPSTARSAQTYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNQNANKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=558106 KCG55_RS02520 WP_254323300.1 518191..520323(-) (pilQ) [Neisseria subflava strain HP0015]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTATTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATTATCAAAATCCGTTTCGACAAAGACGTCACTACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATCGCATTGGATTTTGCCAACACCAATATCCGTTTGCCTCAGCCTGTTTTG
GAATATGCAGACCCATTGCTGAATCAAATTACTGCGGCACAAAACAATGACCGCGCACGCGTAGTTTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAAATTCGCGGCAACGAAGTTTGGGTATTTGTAAATGAATCTACTGATCAAACCAATGCGA
TCGTTGCAAATGAACGTGCGGCTACGCCGTCTACCGCGCGCTCTGCTCAGACTTATCAAGCCGTTTCAGCAGCCAATATC
GATTTTCGCAAAGGCGCACGCAATTCCGGCATTATTGAATTGTCCGCCCCTGGTTTCAGCGGACAGCCGGACATTAAACA
GCAGCGCGACCGCGTGGTTGTTACCTTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGATT
TCAATACCCCTGTACAAAACGTTACGCTCAAACGTATCGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCCTCTTCCGGCCGTTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCGGCGG
CTTGAACCAAAATGCAAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCAAAAGAATCCGGCGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACCCTGTCTCTGAAA
GATGTACCTTGGGATCAGGCTTTAGACTTGGTTATGCAGGCGCGCAATTTGGATATGCGCCGTCAAGGCAACATCATTAA
TATTGCGCCTCGCGATGAATTGTTGGCAAAAGACAAAGCCTTCTTGCAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGCTGAAATACAAAAATGTGGAAGAGTTCCGCAAAATTCTGCGTTTGGAAGAATACGACAGC
AATAATTCCAACACCCGCAACACTCTGTTGAGCAACCGAGGCAGCGCCTTAATCGATCCTGCCACCAATACGCTGATCGT
GACCGACAACCGCGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGATGTTCCAACCCGTCAAGTAATGGTGG
AAGCGCGTATTGTGGAAGCAGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCAAGTGGCCGT
AACGCATGGGGTAGCAACTGGAGCAATGCGCAAACCAACTACAATACCAATGCCTCGTTTAACCGTGGCGACGTAGGCTA
CCGCACATGGACTTTGGATCCGAATGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGTGCATTGGGCTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCTAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCGACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTGGATTCTCTGACAACCAAGTGTATCAATACCAAGCACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGTACTAATGCAGTGAACAAAGT
CCCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGTGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATCATGGATAATGTGGGTAACAATCTGCGTTACTGA

Domains

Predicted by InterProScan.

AMIN domain (AMIN)

(38-115)

Secretin and TonB N terminus short domain (STN)

(303-350)

Bacterial type II and III secretion system protein (Secretin)

(545-702)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

64.189

100

0.669
  pilQ Neisseria meningitidis M1080

61.161

100

0.668
  pilQ Neisseria meningitidis MC58

68.705

78.31

0.538