Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KCG55_RS02525 Genome accession   NZ_CP073117
Coordinates   520344..520886 (-) Length   180 a.a.
NCBI ID   WP_003684527.1    Uniprot ID   A0A4D7WUN7
Organism   Neisseria subflava strain HP0015     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515344..525886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS02510 (KCG55_02515) - 516324..516836 (-) 513 WP_283255526.1 shikimate kinase -
  KCG55_RS02515 (KCG55_02520) - 516961..517968 (+) 1008 WP_254323299.1 IS5 family transposase -
  KCG55_RS02520 (KCG55_02525) pilQ 518191..520323 (-) 2133 WP_254323300.1 type IV pilus secretin PilQ Machinery gene
  KCG55_RS02525 (KCG55_02530) pilP 520344..520886 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  KCG55_RS02530 (KCG55_02535) pilO 520902..521573 (-) 672 WP_254323301.1 type 4a pilus biogenesis protein PilO -
  KCG55_RS02535 (KCG55_02540) pilN 521573..522196 (-) 624 WP_107867828.1 PilN domain-containing protein Machinery gene
  KCG55_RS02540 (KCG55_02545) pilM 522201..523292 (-) 1092 WP_070825873.1 type IV pilus assembly protein PilM -
  KCG55_RS02545 (KCG55_02550) - 523446..525833 (+) 2388 WP_254323302.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20019.51 Da        Isoelectric Point: 5.3039

>NTDB_id=558107 KCG55_RS02525 WP_003684527.1 520344..520886(-) (pilP) [Neisseria subflava strain HP0015]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYSPPNFKGMNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSNSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=558107 KCG55_RS02525 WP_003684527.1 520344..520886(-) (pilP) [Neisseria subflava strain HP0015]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGTACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCGAAATCCAAGATTATTCCGTTTGAAGAACCGACGGTTACATTGCCTAAGCCGTATAGCC
CGCCGAACTTTAAAGGCATGAATGCGTTTGATTCACGCCGTTTGGACACTGCCCCTAAAGGTGGCAATGCGCCGGATGTG
AACCGTCCGAAAGAAACATTGGAAGCCTTCAGTTTGGAAAATATGGCCTTTGTCGGAACGCTGCAAAGCGGTGGCAAAGT
TTCCGGATTTATCAAGGTCAACGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTATGGCAGAATCC
AAAGTATTACCGAAGATAAAATTATCTTGACCGAGCAAGTCGAAGACAGCTACGGCAACTGGGTATACCGGAAGGCCGAA
TTGCCATTGAGCAGTAAAGAGGCGGATTCTTCCAATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WUN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60.588

94.444

0.572