Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KCG56_RS03165 Genome accession   NZ_CP073116
Coordinates   644952..645497 (-) Length   181 a.a.
NCBI ID   WP_137040873.1    Uniprot ID   A0A4D7WGV0
Organism   Neisseria subflava strain TT0073     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 639952..650497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS03140 (KCG56_03155) - 641047..641616 (-) 570 WP_254321874.1 RNA 2'-phosphotransferase -
  KCG56_RS03145 (KCG56_03160) trpE 641660..643135 (-) 1476 WP_254321875.1 anthranilate synthase component I -
  KCG56_RS03150 (KCG56_03165) - 643271..643648 (-) 378 WP_254321876.1 hypothetical protein -
  KCG56_RS03155 (KCG56_03170) - 643785..644405 (+) 621 WP_254321877.1 Smr/MutS family protein -
  KCG56_RS03160 (KCG56_03175) pilL 644459..644947 (-) 489 WP_254321878.1 PilX family type IV pilin Machinery gene
  KCG56_RS03165 (KCG56_03180) pilK 644952..645497 (-) 546 WP_137040873.1 pilus assembly protein Machinery gene
  KCG56_RS03170 (KCG56_03185) pilJ 645476..646399 (-) 924 WP_254321879.1 pilus assembly protein PilW Machinery gene
  KCG56_RS03175 (KCG56_03190) pilV 646402..647049 (-) 648 WP_254321880.1 type IV pilus modification protein PilV -
  KCG56_RS03180 (KCG56_03195) pilH 647065..647730 (-) 666 WP_254321881.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG56_RS03185 (KCG56_03200) dnaB 647889..649295 (-) 1407 WP_070460859.1 replicative DNA helicase -
  KCG56_RS03190 (KCG56_03205) - 649450..650031 (+) 582 WP_254321882.1 superoxide dismutase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20166.02 Da        Isoelectric Point: 8.4501

>NTDB_id=558070 KCG56_RS03165 WP_137040873.1 644952..645497(-) (pilK) [Neisseria subflava strain TT0073]
MRRPITLIKPDRQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADRKLATTLAEAALREGENQIFDIEGKKTTF
TAECTKGLCSTPNVKSNGDFTEEGNPTVDAWKRKCDKSLCIDANGTEYPLDKKSGIVNNPRYIIEYLGKTTEGRITYRVT
AKAWGKNANTQVVLQSYVASE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=558070 KCG56_RS03165 WP_137040873.1 644952..645497(-) (pilK) [Neisseria subflava strain TT0073]
ATGCGCCGACCGATCACTCTAATCAAACCTGACCGGCAGCAGGGCTATGCTTTGTTTATCGTCTTAATGATGATGGTCGT
CATCGCCCTGCTCGTGGTTACAGCCACCCAGTCCTACAATACCGAACAGCGTATCAGTACCAATGATGCCGACCGCAAAC
TGGCAACCACCCTAGCCGAAGCGGCACTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGTAAAAAGACTACTTTT
ACTGCAGAATGTACAAAAGGTTTATGTTCCACACCAAACGTAAAATCCAATGGCGATTTTACTGAAGAAGGCAACCCAAC
CGTAGATGCTTGGAAGCGCAAATGCGACAAAAGCCTGTGTATTGACGCCAATGGTACGGAATATCCTTTAGATAAAAAAA
GCGGCATCGTAAATAATCCACGCTACATCATCGAATATTTAGGTAAAACGACAGAGGGTCGAATTACCTACCGCGTTACC
GCCAAGGCATGGGGTAAAAATGCCAATACCCAAGTCGTTCTTCAGTCTTACGTTGCCAGCGAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(14-64)

Type IV pilus assembly protein PilX C-term (PilX)

(101-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WGV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

55.941

100

0.624