Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KCG56_RS03180 Genome accession   NZ_CP073116
Coordinates   647065..647730 (-) Length   221 a.a.
NCBI ID   WP_254321881.1    Uniprot ID   A0A9X9N3S0
Organism   Neisseria subflava strain TT0073     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 642065..652730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS03150 (KCG56_03165) - 643271..643648 (-) 378 WP_254321876.1 hypothetical protein -
  KCG56_RS03155 (KCG56_03170) - 643785..644405 (+) 621 WP_254321877.1 Smr/MutS family protein -
  KCG56_RS03160 (KCG56_03175) pilL 644459..644947 (-) 489 WP_254321878.1 PilX family type IV pilin Machinery gene
  KCG56_RS03165 (KCG56_03180) pilK 644952..645497 (-) 546 WP_137040873.1 pilus assembly protein Machinery gene
  KCG56_RS03170 (KCG56_03185) pilJ 645476..646399 (-) 924 WP_254321879.1 pilus assembly protein PilW Machinery gene
  KCG56_RS03175 (KCG56_03190) pilV 646402..647049 (-) 648 WP_254321880.1 type IV pilus modification protein PilV -
  KCG56_RS03180 (KCG56_03195) pilH 647065..647730 (-) 666 WP_254321881.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG56_RS03185 (KCG56_03200) dnaB 647889..649295 (-) 1407 WP_070460859.1 replicative DNA helicase -
  KCG56_RS03190 (KCG56_03205) - 649450..650031 (+) 582 WP_254321882.1 superoxide dismutase -
  KCG56_RS03195 (KCG56_03210) - 650255..651796 (+) 1542 WP_254321883.1 OFA family MFS transporter -
  KCG56_RS03200 (KCG56_03215) - 651855..652700 (-) 846 WP_254321884.1 DUF817 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24437.67 Da        Isoelectric Point: 8.1066

>NTDB_id=558072 KCG56_RS03180 WP_254321881.1 647065..647730(-) (pilH) [Neisseria subflava strain TT0073]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLAYADKNGDSNYKNDTVDLSIRSIILNGDTEKVEYSFDYIPIGNDRSALSASTSKEVWWRFLPNGTFGH
STDGKNYQFSDGHIRISLTDKSAADAETKKARATVLLINGNGHVEICAKNDERKMCEYTSK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=558072 KCG56_RS03180 WP_254321881.1 647065..647730(-) (pilH) [Neisseria subflava strain TT0073]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CGCGAAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGTCAAAATCAAATCCGATGGCTCGCCCAATAAT
GGTTGCGATTCCAAATATGCCGGTAATGGTATGTTGGCCTACGCCGATAAAAACGGAGATTCCAACTATAAAAACGATAC
AGTCGATTTATCCATCCGCTCCATTATTCTTAATGGAGATACTGAAAAAGTAGAATACAGCTTCGACTATATTCCTATCG
GCAATGACCGTTCTGCTCTTTCTGCTTCAACTTCAAAAGAAGTCTGGTGGAGATTCTTGCCTAATGGTACATTTGGCCAT
TCAACTGATGGAAAGAATTATCAATTTTCAGACGGCCACATCAGAATCAGCCTAACAGATAAATCTGCCGCCGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTAATTAATGGCAATGGACATGTCGAAATCTGTGCTAAAAACGATGAGCGCA
AAATGTGCGAATACACTTCCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.505

100

0.548