Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   KCG56_RS03170 Genome accession   NZ_CP073116
Coordinates   645476..646399 (-) Length   307 a.a.
NCBI ID   WP_254321879.1    Uniprot ID   A0A9X9N3V4
Organism   Neisseria subflava strain TT0073     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 640476..651399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS03140 (KCG56_03155) - 641047..641616 (-) 570 WP_254321874.1 RNA 2'-phosphotransferase -
  KCG56_RS03145 (KCG56_03160) trpE 641660..643135 (-) 1476 WP_254321875.1 anthranilate synthase component I -
  KCG56_RS03150 (KCG56_03165) - 643271..643648 (-) 378 WP_254321876.1 hypothetical protein -
  KCG56_RS03155 (KCG56_03170) - 643785..644405 (+) 621 WP_254321877.1 Smr/MutS family protein -
  KCG56_RS03160 (KCG56_03175) pilL 644459..644947 (-) 489 WP_254321878.1 PilX family type IV pilin Machinery gene
  KCG56_RS03165 (KCG56_03180) pilK 644952..645497 (-) 546 WP_137040873.1 pilus assembly protein Machinery gene
  KCG56_RS03170 (KCG56_03185) pilJ 645476..646399 (-) 924 WP_254321879.1 pilus assembly protein PilW Machinery gene
  KCG56_RS03175 (KCG56_03190) pilV 646402..647049 (-) 648 WP_254321880.1 type IV pilus modification protein PilV -
  KCG56_RS03180 (KCG56_03195) pilH 647065..647730 (-) 666 WP_254321881.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG56_RS03185 (KCG56_03200) dnaB 647889..649295 (-) 1407 WP_070460859.1 replicative DNA helicase -
  KCG56_RS03190 (KCG56_03205) - 649450..650031 (+) 582 WP_254321882.1 superoxide dismutase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 33371.03 Da        Isoelectric Point: 8.1103

>NTDB_id=558071 KCG56_RS03170 WP_254321879.1 645476..646399(-) (pilJ) [Neisseria subflava strain TT0073]
MNNKRLLNHIPNKTAIRGFSILEFLVASLLSMIVLMAVSSTYFTARGLNKSANARIGIQQDLRNAANMIVRDARMAGNFG
CFNMANFPASAVIEDKSSNEYTLKTADVNNLLPVKEINLSYPGFKKALLFQYGIDKKNPVAKTAIASSCFGIAKPHTEIK
DLAAAKSALKITDSDQNGSIAIMKHEMIAYAVGTLDKENGLFRFQLSDNGSWSNPQLLIKGITSMDLHYIYAECPDSENA
SASGANAETFKYADQLDTSIEAKSPASIQIVLNNGSIDPSKEQDNKVDIYNINATIRGGNVCADRSL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=558071 KCG56_RS03170 WP_254321879.1 645476..646399(-) (pilJ) [Neisseria subflava strain TT0073]
ATGAACAATAAACGCTTACTCAACCATATTCCCAATAAAACCGCCATTCGCGGCTTCAGCATCCTTGAATTTCTGGTTGC
CAGCCTGCTCAGCATGATCGTCTTAATGGCTGTCAGCTCCACCTACTTTACTGCACGCGGATTAAACAAGTCTGCCAACG
CCCGTATCGGTATCCAACAAGATTTGCGCAACGCCGCCAATATGATCGTCCGCGATGCGCGTATGGCAGGCAATTTCGGC
TGCTTCAATATGGCGAATTTTCCTGCCTCTGCAGTGATAGAAGACAAAAGCTCAAATGAATACACATTGAAAACAGCCGA
TGTGAATAATCTGTTACCGGTTAAAGAAATCAATTTAAGCTATCCTGGCTTTAAAAAAGCCCTGCTGTTTCAATACGGTA
TTGACAAGAAAAATCCTGTTGCAAAAACCGCCATTGCCAGCAGTTGCTTCGGAATTGCCAAACCTCACACAGAAATTAAA
GATTTGGCTGCGGCAAAATCGGCTTTGAAAATTACCGACTCTGATCAAAACGGCAGTATCGCCATCATGAAACATGAAAT
GATTGCTTATGCCGTTGGTACGCTTGACAAAGAGAACGGCTTATTCCGTTTCCAATTGTCTGATAATGGCTCATGGAGTA
ATCCACAGCTGCTAATTAAAGGCATTACAAGCATGGATCTTCATTATATCTATGCAGAATGTCCTGATTCTGAAAATGCA
TCAGCAAGTGGAGCAAATGCGGAAACCTTTAAGTATGCAGATCAATTGGATACCTCAATTGAGGCTAAGTCTCCGGCTTC
TATCCAAATCGTACTGAATAACGGCAGTATTGACCCATCAAAAGAACAAGACAATAAAGTCGATATCTATAATATTAATG
CCACCATCCGCGGAGGAAACGTATGCGCCGACCGATCACTCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

47.962

100

0.498