Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG54_RS11210 Genome accession   NZ_CP073115
Coordinates   2312399..2312893 (-) Length   164 a.a.
NCBI ID   WP_254324105.1    Uniprot ID   A0A9X9N0Z5
Organism   Neisseria subflava strain TT0077     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2309538..2312108 2312399..2312893 flank 291


Gene organization within MGE regions


Location: 2309538..2312893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS11200 (KCG54_11210) - 2309538..2310545 (+) 1008 WP_254324202.1 IS5 family transposase -
  KCG54_RS11205 (KCG54_11215) - 2310996..2311991 (+) 996 Protein_2179 IS5 family transposase -
  KCG54_RS11210 (KCG54_11220) comP 2312399..2312893 (-) 495 WP_254324105.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18233.35 Da        Isoelectric Point: 10.1969

>NTDB_id=558055 KCG54_RS11210 WP_254324105.1 2312399..2312893(-) (comP) [Neisseria subflava strain TT0077]
MYLKAFDRKRDRATVQRGYSLIQLLVVMLLVSILATAAFTVYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=558055 KCG54_RS11210 WP_254324105.1 2312399..2312893(-) (comP) [Neisseria subflava strain TT0077]
ATGTACTTAAAAGCATTTGACAGAAAACGGGATAGGGCAACTGTGCAGAGGGGCTACTCCTTGATACAGCTGCTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGACGGCGGCCTTTACGGTCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CTCATGCCGCACTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAATTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGCCAGGCTAAGGGTATCCTGGAGGG
TAAGTTTACCTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAATGAGTCGCTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGCAGTTGTACGGACGGTGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTATGGGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(42-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

97.561

100

0.976
  comP Neisseria meningitidis 8013

50.336

90.854

0.457
  comP Neisseria gonorrhoeae MS11

50.34

89.634

0.451