Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   KCG54_RS06540 Genome accession   NZ_CP073115
Coordinates   1354135..1354623 (+) Length   162 a.a.
NCBI ID   WP_254323728.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349135..1359623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS06515 (KCG54_06565) dnaB 1349776..1351182 (+) 1407 WP_254323723.1 replicative DNA helicase -
  KCG54_RS06520 (KCG54_06570) pilH 1351340..1352005 (+) 666 WP_254323724.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG54_RS06525 (KCG54_06575) pilV 1352021..1352668 (+) 648 WP_254323725.1 type IV pilus modification protein PilV -
  KCG54_RS06530 (KCG54_06580) pilJ 1352671..1353606 (+) 936 WP_254323726.1 pilus assembly protein PilW Machinery gene
  KCG54_RS06535 (KCG54_06585) pilK 1353585..1354130 (+) 546 WP_254323727.1 pilus assembly protein Machinery gene
  KCG54_RS06540 (KCG54_06590) pilL 1354135..1354623 (+) 489 WP_254323728.1 PilX family type IV pilin Machinery gene
  KCG54_RS06545 (KCG54_06595) - 1354675..1355295 (-) 621 WP_254323729.1 Smr/MutS family protein -
  KCG54_RS06550 (KCG54_06600) - 1355432..1355809 (+) 378 WP_101755531.1 hypothetical protein -
  KCG54_RS06555 (KCG54_06605) trpE 1355945..1357420 (+) 1476 WP_254323730.1 anthranilate synthase component I -
  KCG54_RS06560 (KCG54_06610) - 1357464..1358033 (+) 570 WP_254323731.1 RNA 2'-phosphotransferase -
  KCG54_RS06565 (KCG54_06615) - 1358113..1359252 (+) 1140 WP_283254591.1 5-(carboxyamino)imidazole ribonucleotide synthase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18104.74 Da        Isoelectric Point: 9.5968

>NTDB_id=558040 KCG54_RS06540 WP_254323728.1 1354135..1354623(+) (pilL) [Neisseria subflava strain TT0077]
MNTTSTQQLGFTLVEMMIAVAILGILSIIAIPSYNRYIERGYQSQVHAELVAINSAFKNQMVKNPKWKTDEIKTQLDDFI
SSYKGHKDLADKYKYSAEMIDASTSRAYRLKAIPTKTGYTLSVWMDSLGNAYKCTDIDSANNFKTAMTNGKGCESISKKK
SS

Nucleotide


Download         Length: 489 bp        

>NTDB_id=558040 KCG54_RS06540 WP_254323728.1 1354135..1354623(+) (pilL) [Neisseria subflava strain TT0077]
ATGAATACCACCTCTACCCAACAACTAGGCTTTACGCTGGTTGAGATGATGATTGCCGTCGCCATCTTAGGCATCCTGAG
CATCATTGCCATTCCCTCTTACAACCGCTACATTGAACGAGGCTACCAATCACAAGTGCATGCCGAGTTAGTCGCCATCA
ATTCCGCTTTTAAAAACCAGATGGTTAAAAATCCAAAGTGGAAAACTGATGAGATTAAAACTCAGTTGGATGACTTTATT
TCCTCATACAAAGGCCATAAAGATTTGGCAGACAAATACAAATACTCCGCCGAAATGATTGATGCCAGTACAAGCCGAGC
CTATCGTTTGAAAGCCATTCCCACAAAAACAGGCTATACCCTTTCCGTTTGGATGGATAGTTTGGGCAATGCTTACAAAT
GCACTGATATTGATTCAGCCAATAATTTCAAAACCGCAATGACCAATGGAAAAGGTTGCGAATCAATTTCCAAAAAGAAA
TCTTCTTAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(37-160)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

50.968

95.679

0.488
  pilX Neisseria meningitidis 8013

49.677

95.679

0.475