Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KCG54_RS06520 Genome accession   NZ_CP073115
Coordinates   1351340..1352005 (+) Length   221 a.a.
NCBI ID   WP_254323724.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346340..1357005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS06500 (KCG54_06550) - 1346370..1347215 (+) 846 WP_254323722.1 DUF817 domain-containing protein -
  KCG54_RS06505 (KCG54_06555) - 1347275..1348816 (-) 1542 WP_070608251.1 OFA family MFS transporter -
  KCG54_RS06510 (KCG54_06560) - 1349040..1349621 (-) 582 WP_070460856.1 superoxide dismutase -
  KCG54_RS06515 (KCG54_06565) dnaB 1349776..1351182 (+) 1407 WP_254323723.1 replicative DNA helicase -
  KCG54_RS06520 (KCG54_06570) pilH 1351340..1352005 (+) 666 WP_254323724.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG54_RS06525 (KCG54_06575) pilV 1352021..1352668 (+) 648 WP_254323725.1 type IV pilus modification protein PilV -
  KCG54_RS06530 (KCG54_06580) pilJ 1352671..1353606 (+) 936 WP_254323726.1 pilus assembly protein PilW Machinery gene
  KCG54_RS06535 (KCG54_06585) pilK 1353585..1354130 (+) 546 WP_254323727.1 pilus assembly protein Machinery gene
  KCG54_RS06540 (KCG54_06590) pilL 1354135..1354623 (+) 489 WP_254323728.1 PilX family type IV pilin Machinery gene
  KCG54_RS06545 (KCG54_06595) - 1354675..1355295 (-) 621 WP_254323729.1 Smr/MutS family protein -
  KCG54_RS06550 (KCG54_06600) - 1355432..1355809 (+) 378 WP_101755531.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24481.72 Da        Isoelectric Point: 8.1058

>NTDB_id=558037 KCG54_RS06520 WP_254323724.1 1351340..1352005(+) (pilH) [Neisseria subflava strain TT0077]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLAYADKNEDSNYKNDTVDLSVRSIILNGDTDKVEYSFNHIPTGTERPALSASASKEVWWRFLPNGTFGH
STDGKNYQFSDGYIKISLTDKSTADAETKKARATVLLINGNGHVEICTKNDERKMCEYTSK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=558037 KCG54_RS06520 WP_254323724.1 1351340..1352005(+) (pilH) [Neisseria subflava strain TT0077]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCAGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCTAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAACCTGTTGCGCTTCG
CGCGTAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGTCAAAATTAAATCCGATGGCTCGCCCAATAAT
GGTTGCGATTCCAAATATGCCGGTAATGGTATGTTGGCTTACGCTGATAAAAACGAAGATTCCAACTATAAAAACGATAC
AGTCGATTTATCCGTCCGTTCCATTATTCTTAATGGAGATACTGACAAAGTGGAATACAGCTTCAACCATATCCCTACCG
GTACTGAACGTCCTGCACTATCTGCTTCCGCTTCAAAAGAAGTCTGGTGGAGATTCCTGCCCAATGGTACATTTGGCCAT
TCGACCGATGGCAAAAATTATCAATTTTCAGACGGCTACATCAAAATCAGCCTGACGGATAAATCCACCGCCGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTAATCAATGGCAATGGGCATGTCGAAATCTGTACTAAAAACGATGAGCGCA
AAATGTGCGAATACACTTCCAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-201)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

55.157

100

0.557