NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	KCG54_RS01450	Genome accession	NZ_CP073115
Coordinates	299319..300206 (-)	Length	295 a.a.
NCBI ID	WP_254324429.1	Uniprot ID	-
Organism	Neisseria subflava strain TT0077
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 294319..305206

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCG54_RS01420 (KCG54_01390)	ftsZ	294583..295782 (+)	1200	WP_003748303.1	cell division protein FtsZ	-
KCG54_RS01425 (KCG54_01395)	ispH	295902..296870 (-)	969	WP_254324427.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
KCG54_RS01430 (KCG54_01400)	lspA	296884..297390 (-)	507	WP_049331903.1	signal peptidase II	-
KCG54_RS01435 (KCG54_01405)	glyQ	297539..298438 (-)	900	WP_003685919.1	glycine--tRNA ligase subunit alpha	-
KCG54_RS01440 (KCG54_01410)	yacG	298520..298702 (-)	183	WP_003682475.1	DNA gyrase inhibitor YacG	-
KCG54_RS01445 (KCG54_01415)	coaE	298699..299319 (-)	621	WP_254324428.1	dephospho-CoA kinase	-
KCG54_RS01450 (KCG54_01420)	pilD	299319..300206 (-)	888	WP_254324429.1	A24 family peptidase	Machinery gene
KCG54_RS01455 (KCG54_01425)	pilG	300208..301449 (-)	1242	WP_254322302.1	type II secretion system F family protein	Machinery gene
KCG54_RS01460 (KCG54_01430)	pilF	301529..303208 (-)	1680	WP_254324430.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

Download Length: 295 a.a. Molecular weight: 32456.71 Da Isoelectric Point: 8.3206

                                >NTDB_id=558019 KCG54_RS01450 WP_254324429.1 299319..300206(-) (pilD) [Neisseria subflava strain TT0077]

MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK

CKSPIRVWQNMPILSYVFLGGKCHACKTHISIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDADTQY

LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF

MAALVGLLGVLIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide

Download Length: 888 bp

                                >NTDB_id=558019 KCG54_RS01450 WP_254324429.1 299319..300206(-) (pilD) [Neisseria subflava strain TT0077]

ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCGCCATTCGCGATTCCTTTAGCCGTTATTTTAGG

ATTACTGATTGGTAGCTTTCTGAATGTCGTCATTTATCGCACGCCGATAATGATGGAGCGTGAATGGACACAATTTTCCA

AAGAGCATTTGGGCATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGTAAACCGGATTCACGCTGCCCAAAA

TGCAAAAGTCCGATCAGAGTTTGGCAAAATATGCCCATCCTCAGCTATGTTTTCCTAGGTGGGAAATGCCACGCCTGCAA

AACCCATATCAGCATACGCTATCCGTTGATTGAGCTGCTGACAGGTGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT

GGTCATGGGCAACTATTGGCGGATTAATTCTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACGCAATAT

TTGCCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAATGATACATTCGTTCCCCTGCATTC

AGCCGTTTGGGGTGCGATTGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG

GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCACTCGGTGCATGGCTGGGCGTAGGAATTTTGCCTGTTCTGATCTTT

ATGGCTGCCTTAGTCGGGCTGTTAGGCGTACTCATCGCCCGCGTCGGCAAAGGCCAATATTTTGCTTTTGGTCCCAGCCT

CGCTGTAGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTTCAATGGTGGCTCGTACAATCAGGAT

TCCGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)

Type IV leader peptidase family (Peptidase_A24)

(142-248)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Neisseria gonorrhoeae MS11	70.318	95.932	0.675
pilD	Vibrio cholerae strain A1552	47.692	88.136	0.42
pilD	Vibrio campbellii strain DS40M4	44.364	93.22	0.414
pilD	Acinetobacter baumannii D1279779	47.012	85.085	0.4
pilD	Acinetobacter nosocomialis M2	47.012	85.085	0.4

Detailed information NTG0558019