Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG52_RS08510 Genome accession   NZ_CP073114
Coordinates   1790810..1791097 (+) Length   95 a.a.
NCBI ID   WP_004520163.1    Uniprot ID   A0AAF1BTY2
Organism   Neisseria subflava strain HP0048     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785810..1796097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS08510 (KCG52_08535) comE 1790810..1791097 (+) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG52_RS08515 (KCG52_08540) hpnD 1791641..1792489 (+) 849 WP_254343779.1 presqualene diphosphate synthase HpnD -
  KCG52_RS08520 (KCG52_08545) hpnE 1792486..1793793 (+) 1308 WP_254343781.1 hydroxysqualene dehydroxylase HpnE -
  KCG52_RS08525 (KCG52_08550) - 1793889..1794608 (+) 720 WP_254343783.1 SDR family oxidoreductase -
  KCG52_RS08530 (KCG52_08555) thiL 1794797..1795753 (+) 957 WP_070711864.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9791.48 Da        Isoelectric Point: 10.4923

>NTDB_id=558009 KCG52_RS08510 WP_004520163.1 1790810..1791097(+) (comE) [Neisseria subflava strain HP0048]
MKKFLFGVFAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558009 KCG52_RS08510 WP_004520163.1 1790810..1791097(+) (comE) [Neisseria subflava strain HP0048]
ATGAAGAAATTTTTATTTGGTGTATTTGCCGCCGTGTGTACGGCATTCTCTTTGGCCGCCGTGAACGTCAATACGGCCTC
TTCTGCGGAACTGGAGGCATTGCCGGGTATCGGTCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474