Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KCG52_RS07545 Genome accession   NZ_CP073114
Coordinates   1576593..1577135 (+) Length   180 a.a.
NCBI ID   WP_049347906.1    Uniprot ID   A0A9X9SN29
Organism   Neisseria subflava strain HP0048     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1571593..1582135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS07525 (KCG52_07505) - 1571638..1574034 (-) 2397 WP_254343581.1 penicillin-binding protein 1A -
  KCG52_RS07530 (KCG52_07510) pilM 1574187..1575278 (+) 1092 WP_254343583.1 type IV pilus assembly protein PilM -
  KCG52_RS07535 (KCG52_07515) pilN 1575283..1575906 (+) 624 WP_036492821.1 PilN domain-containing protein Machinery gene
  KCG52_RS07540 (KCG52_07520) pilO 1575906..1576577 (+) 672 WP_003748967.1 type 4a pilus biogenesis protein PilO -
  KCG52_RS07545 (KCG52_07525) pilP 1576593..1577135 (+) 543 WP_049347906.1 pilus assembly protein PilP Machinery gene
  KCG52_RS07550 (KCG52_07530) pilQ 1577156..1579288 (+) 2133 WP_254343584.1 type IV pilus secretin PilQ Machinery gene
  KCG52_RS07555 (KCG52_07535) - 1579419..1579931 (+) 513 WP_283254529.1 shikimate kinase -
  KCG52_RS07560 (KCG52_07540) aroB 1579953..1581032 (+) 1080 WP_107848890.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20029.48 Da        Isoelectric Point: 5.0186

>NTDB_id=558006 KCG52_RS07545 WP_049347906.1 1576593..1577135(+) (pilP) [Neisseria subflava strain HP0048]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYNPPNFKGLNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKEADSSDSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=558006 KCG52_RS07545 WP_049347906.1 1576593..1577135(+) (pilP) [Neisseria subflava strain HP0048]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGCACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCGAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCCAAGCCGTATAACC
CTCCAAATTTTAAAGGCTTGAATGCGTTTGATTCACGCCGTTTGGATACTGCCCCTAAAGGCGGTAATGCGCCGGATGTA
AACCGTCCGAAAGAAACCTTGGAAGCCTTCAGTCTGGAAAACATGGCTTTTGTCGGAACGCTGCAAAGCGGCGGCAAAGT
TTCCGGATTTATCAAAGTCAACGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACTGAAGATAAAATTATCCTGACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCTGAA
TTGCCGTTGAGCAGCAAAGAGGCAGATTCTTCCGATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60

94.444

0.567