Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KCG52_RS07535 Genome accession   NZ_CP073114
Coordinates   1575283..1575906 (+) Length   207 a.a.
NCBI ID   WP_036492821.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570283..1580906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS07520 (KCG52_07500) - 1570741..1571577 (-) 837 WP_254343579.1 PHP domain-containing protein -
  KCG52_RS07525 (KCG52_07505) - 1571638..1574034 (-) 2397 WP_254343581.1 penicillin-binding protein 1A -
  KCG52_RS07530 (KCG52_07510) pilM 1574187..1575278 (+) 1092 WP_254343583.1 type IV pilus assembly protein PilM -
  KCG52_RS07535 (KCG52_07515) pilN 1575283..1575906 (+) 624 WP_036492821.1 PilN domain-containing protein Machinery gene
  KCG52_RS07540 (KCG52_07520) pilO 1575906..1576577 (+) 672 WP_003748967.1 type 4a pilus biogenesis protein PilO -
  KCG52_RS07545 (KCG52_07525) pilP 1576593..1577135 (+) 543 WP_049347906.1 pilus assembly protein PilP Machinery gene
  KCG52_RS07550 (KCG52_07530) pilQ 1577156..1579288 (+) 2133 WP_254343584.1 type IV pilus secretin PilQ Machinery gene
  KCG52_RS07555 (KCG52_07535) - 1579419..1579931 (+) 513 WP_283254529.1 shikimate kinase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23087.30 Da        Isoelectric Point: 4.7171

>NTDB_id=558005 KCG52_RS07535 WP_036492821.1 1575283..1575906(+) (pilN) [Neisseria subflava strain HP0048]
MIELTRINLLPYREEIKQRKQQQFKVLMLGAFAVGLGLAAATYLGIDNAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNTLTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=558005 KCG52_RS07535 WP_036492821.1 1575283..1575906(+) (pilN) [Neisseria subflava strain HP0048]
ATGATTGAATTAACCAGAATCAACCTTCTCCCGTATCGAGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAGTATT
GATGCTTGGCGCTTTTGCCGTGGGTTTGGGCTTGGCGGCCGCAACTTATCTCGGCATTGACAACGCCATTAGTAATCAAG
AAGGGCGCAACAACTTCCTGCAAACCGAAATCGACAGACTCGATAGGGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCTAAAAAGCTGAAAGTGGAAGAATTGCAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATACGCTTACGCCCGATAATACTTATTTGACCGCGTTGGAAGCCGAAAGCCCGACCAGCTATAAAATCAGCGGCC
ATGCCATCAGCGACAATAAAATCGCCGTTATGATGCGCTCCCTGCCGAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAGGTGAATACGCCGGCTCCCGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCCGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.853

95.169

0.541