Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG52_RS06200 Genome accession   NZ_CP073114
Coordinates   1306662..1306949 (+) Length   95 a.a.
NCBI ID   WP_004520163.1    Uniprot ID   A0AAF1BTY2
Organism   Neisseria subflava strain HP0048     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1301662..1311949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS06200 (KCG52_06180) comE 1306662..1306949 (+) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG52_RS06205 (KCG52_06185) - 1307126..1307323 (-) 198 WP_254343392.1 hypothetical protein -
  KCG52_RS06210 (KCG52_06190) pyrB 1307322..1308242 (+) 921 WP_254343393.1 aspartate carbamoyltransferase -
  KCG52_RS06215 (KCG52_06195) pyrI 1308253..1308711 (+) 459 WP_003749219.1 aspartate carbamoyltransferase regulatory subunit -
  KCG52_RS06220 (KCG52_06200) - 1308905..1309570 (+) 666 WP_049348625.1 hypothetical protein -
  KCG52_RS06225 (KCG52_06205) - 1309846..1310709 (+) 864 WP_070836923.1 GNAT family N-acetyltransferase -
  KCG52_RS10610 - 1310733..1310861 (+) 129 WP_283140398.1 hypothetical protein -
  KCG52_RS06230 (KCG52_06210) - 1310927..1311430 (-) 504 WP_254343394.1 hypothetical protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9791.48 Da        Isoelectric Point: 10.4923

>NTDB_id=558000 KCG52_RS06200 WP_004520163.1 1306662..1306949(+) (comE) [Neisseria subflava strain HP0048]
MKKFLFGVFAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558000 KCG52_RS06200 WP_004520163.1 1306662..1306949(+) (comE) [Neisseria subflava strain HP0048]
ATGAAGAAATTTTTATTTGGTGTATTTGCCGCCGTGTGTACGGCATTCTCTTTGGCCGCCGTGAACGTCAATACGGCCTC
TTCTGCGGAACTGGAGGCATTGCCGGGTATCGGTCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATTGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474