Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   - Genome accession   NZ_UHFV01000002
Coordinates   61092..61127 (+) Length   12 a.a.
NCBI ID   - Uniprot ID   -
Organism   Streptococcus macacae NCTC 11558     
Function   activate transcription of comX; activate transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 56092..66127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS00415 (NCTC11558_00089) - 56136..56867 (+) 732 WP_003081456.1 hypothetical protein -
  DYB47_RS00420 (NCTC11558_00090) purB 57275..58573 (+) 1299 WP_003081632.1 adenylosuccinate lyase -
  DYB47_RS00425 (NCTC11558_00091) - 58684..59343 (+) 660 WP_003079782.1 DNA alkylation repair protein -
  DYB47_RS00430 (NCTC11558_00092) - 59470..59991 (+) 522 WP_003081802.1 HXXEE domain-containing protein -
  DYB47_RS00435 (NCTC11558_00093) comR 60114..61025 (+) 912 WP_003082163.1 helix-turn-helix domain-containing protein Regulator
  - comS 61092..61127 (+) 36 - - Regulator
  DYB47_RS00440 (NCTC11558_00094) - 61449..63287 (-) 1839 WP_003078556.1 carbohydrate-binding domain-containing protein -
  DYB47_RS00445 (NCTC11558_00095) ruvB 63501..64523 (+) 1023 WP_003080562.1 Holliday junction branch migration DNA helicase RuvB -
  DYB47_RS00450 (NCTC11558_00096) - 64652..65077 (+) 426 WP_003079095.1 low molecular weight protein-tyrosine-phosphatase -
  DYB47_RS00455 (NCTC11558_00097) - 65149..65529 (+) 381 WP_040841637.1 membrane protein -

Sequence

Protein


Download         Length: 12 a.a.        Molecular weight: 1484.87 Da        Isoelectric Point: 10.0000

>NTDB_id=558 61092..61127(+) (comS) [Streptococcus macacae NCTC 11558]
MVLLRALPWWSL

Nucleotide


Download         Length: 36 bp        

>NTDB_id=558 61092..61127(+) (comS) [Streptococcus macacae NCTC 11558]
ATGGTACTTTTAAGAGCTTTGCCTTGGTGGAGTCTT

XIP

This gene is known to encode the precursor of σX inducing peptide (XIP), which involves in competence development. The mature XIP sequence is displayed as below:

ALPWWSL


Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

55.556

75

0.417

Multiple sequence alignment